PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g010130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 167aa    MW: 19569.5 Da    PI: 5.1309
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g010130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.75.2e-08130156431
           G2-like   4 lrWtpeLHerFveaveqLGGsekAtPkt 31 
                        +Wt +LH +F++av+qL G+ +  Pk+
  Sopen11g010130.1 130 TKWTDDLHVKFMKAVKQL-GEGRCYPKE 156
                       68****************.999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.6E-51299No hitNo description
SuperFamilySSF521721.18E-51392IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.607.9E-6129155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MTSTTMLMVS KEKQKIDVMI LNIHSSNIPT FDLLAQAVAL DIISLVVCDD YNELEAKKIL  60
DMGEYLYLQK PFDENLVKYL WQFVWRKRIQ KEKAKEGSIA DNDMGGENEE QFEKKKDVSN  120
TEVVRLKDYT KWTDDLHVKF MKAVKQLGEG RCYPKENSAR DEFAWPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-178HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057457.11e-98two-component response regulator ORR26-like
TrEMBLM1CN235e-81M1CN23_SOLTU; Uncharacterized protein
STRINGSolyc11g019990.1.11e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.19e-10response regulator 20