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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sopen11g008200.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GRAS |
| Protein Properties |
Length: 491aa MW: 54724.6 Da PI: 5.2238 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen11g008200.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 338.6 | 1.1e-103 | 105 | 485 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsev 87
lv+lL+++Aea++ +++ la+ +L rl+elasp+g ++m+RlaayfteAL+a + +s s++ ++ ++ + + k+ + ++laa++l++++
Sopen11g008200.1 105 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGaTNMERLAAYFTEALQALMEGSASGTLHTKHMFSPNYKDehrQGDVLAAFQLLQDM 197
68***********85554449****************99*******************99988776644444433334599************ PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
sP++kf+h+taNqaI e+v +++rvHi+D+di++G+QW++L+qaL sR++gpp +lRiT+++++ sg s +++etg+rL+ fA+++g pf
Sopen11g008200.1 198 SPFVKFGHFTANQAIFESVTHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQPF 290
*************************************************776556*********888899999******************** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysal 267
+f+ ++ e +++ + ++ +gEal++n++l+l ++ + ++ ++L+ k+l+P++v++ve+e+ ++e F+ rf+++l++ysal
Sopen11g008200.1 291 SFHHCRLDSDEIFKPTNVKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKTLNPRLVTLVEEELRPigDEEGFVGRFMDTLHHYSAL 380
****99999999************************98554444...459*******************987767889*************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359
+dslea++p +s++r+ vEr++lg++i+ +a ++r e+++ +W e+l+ +GF + ++s + +qaklll ++ dgyr+ee + lv
Sopen11g008200.1 381 YDSLEAGFPLQSRARALVERVFLGPRITGSLARMYRARGEEER--CSWGEWLSGVGFCESNISFANHCQAKLLLGLFN-DGYRMEEIgTNKLV 470
************************************9877666..89*******************************.******9758999* PP
GRAS 360 lgWkdrpLvsvSaWr 374
lgWk+r+L+s+S W+
Sopen11g008200.1 471 LGWKSRRLLSASIWT 485
**************6 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MATIVDETIS DFDCYGSLSI ASTTITTTTT ATTSSSSWND WSPVFDWDVF SGGDNFQDLI 60
ESMVQGSGNC FYKSEHQDCA EFMEEEEESG DSNNNQSEDI DGLKLVHLLM AAAEALTGVN 120
KSRELARVIL VRLKELASPN GATNMERLAA YFTEALQALM EGSASGTLHT KHMFSPNYKD 180
EHRQGDVLAA FQLLQDMSPF VKFGHFTANQ AIFESVTHDR RVHIVDYDIM EGIQWASLMQ 240
ALVSRKDGPP TPHLRITALS RSGSGRRSFG TVQETGRRLT AFAASIGQPF SFHHCRLDSD 300
EIFKPTNVKL VRGEALIINC MLHLPHFSYR ASDSVASFLS GSKTLNPRLV TLVEEELRPI 360
GDEEGFVGRF MDTLHHYSAL YDSLEAGFPL QSRARALVER VFLGPRITGS LARMYRARGE 420
EERCSWGEWL SGVGFCESNI SFANHCQAKL LLGLFNDGYR MEEIGTNKLV LGWKSRRLLS 480
ASIWTTMDID L
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
