PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g006760.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 684aa    MW: 78491 Da    PI: 6.8545
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g006760.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.9e-172677556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +++t eq+++Le++F+++++p++++r +L ++ gL+ +q+k+WFqN+R++ k
  Sopen11g006760.1 26 HRHTMEQIQRLEAFFKECPHPDENQRNQLGREAGLDPKQIKFWFQNKRTQTK 77
                      46899********************************************988 PP
2START105.96.7e-342404584205
                       HHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
             START   4 eeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                        + ++e + + + ++  Wv ss     ++  e++ ++ ++ +        ++e ++++gvv m++ +l  ++ld   +W + ++    ka t+
  Sopen11g006760.1 240 VASMNEMFELLQMNDLIWVDSSsdgGCSIHRESYERIFPNMNrpyksatARIESSKDCGVVSMPANELIHSFLDPV-KWINLFPtivtKARTI 331
                       67899999999999999999998774444444444443444468999999**************************.99888888888***** PP

                       EEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
             START  83 evissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehv 170
                       ev++sg   g +qlm+ +l  lsplv  R+f f+Ry+rq    +w+ vdvS d  ++ ++  +s+    ++pSg+ i++++nghs vtwvehv
  Sopen11g006760.1 332 EVLDSGtlgGSIQLMYEKLHILSPLVEaREFFFIRYCRQIDPTTWIMVDVSYDLFNEIQSgVPSYSW--KFPSGCAIQDMGNGHSMVTWVEHV 422
                       **************************99*********************999998887766666655..9*********************** PP

                       E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
             START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                        +++++    ++r l+  ++  gak+w  +lqr  e
  Sopen11g006760.1 423 QVNEKSQvNHIFRDLLCDRQTYGAKRWIVALQRMSE 458
                       **998766************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-171080IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-191073IPR009057Homeodomain-like
PROSITE profilePS5007116.2611979IPR001356Homeobox domain
SMARTSM003894.0E-161983IPR001356Homeobox domain
CDDcd000861.66E-142080No hitNo description
PfamPF000465.9E-152677IPR001356Homeobox domain
PROSITE profilePS5084832.175228462IPR002913START domain
SuperFamilySSF559613.02E-25231460No hitNo description
CDDcd088752.80E-77235458No hitNo description
SMARTSM002343.9E-17237459IPR002913START domain
Gene3DG3DSA:3.30.530.204.5E-7239423IPR023393START-like domain
PfamPF018521.7E-27240458IPR002913START domain
ProDomPD0233770.001271402IPR005266Uncharacterised protein family UPF0128
SuperFamilySSF559611.65E-7481650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MTDSGEEHIG ESSNSQKKSK RQRQCHRHTM EQIQRLEAFF KECPHPDENQ RNQLGREAGL  60
DPKQIKFWFQ NKRTQTKTQN ERSDNNALRM ENERFLCENM AMKESMKNIM CPKCDGPPIG  120
KEERARNLEN MKLENQRLRE QHEKASNFLS SILGRSFVMG SNLAPPKSTL QTSSNSSDES  180
LLSQNICGSP IGYPPQENNN NVRAHSININ NIPIMSPSRQ EHYEFHHDNR QRTDMFEIVV  240
ASMNEMFELL QMNDLIWVDS SSDGGCSIHR ESYERIFPNM NRPYKSATAR IESSKDCGVV  300
SMPANELIHS FLDPVKWINL FPTIVTKART IEVLDSGTLG GSIQLMYEKL HILSPLVEAR  360
EFFFIRYCRQ IDPTTWIMVD VSYDLFNEIQ SGVPSYSWKF PSGCAIQDMG NGHSMVTWVE  420
HVQVNEKSQV NHIFRDLLCD RQTYGAKRWI VALQRMSERY NFTMGATCPT RHDFEGVFND  480
PEGLKNTIQL SQRMVKSFFE ILSMTDKLDF PTSPQLSNGD RISIRKNEEI TQTKGFIATA  540
ASSLWIPLSF QDVFNFFKDD KTRSKWDILT GGLKMTELAR VPTGTFSENC ITIIQSYLQK  600
EKLVLQESSI DEMGAFLIFA PIELPTMTSI FNGHDATRVP ILPSVSCLLD FATNTDRRVV  660
EPRAKLRGGS IIRQPNNRFA WDSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057403.10.0homeobox-leucine zipper protein ROC8-like
TrEMBLM1B0T30.0M1B0T3_SOLTU; Uncharacterized protein
STRINGSolyc11g011940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-151homeodomain GLABROUS 11