PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g005680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 378aa    MW: 41207.7 Da    PI: 7.0323
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g005680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1261.2e-393090262
            zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      ke+al+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Sopen11g005680.1 30 KEQALNCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 90
                      67999*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.1E-333288IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-263384IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4223488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMSQDNKGES QSSGGGGDDG GGGPMGARPK EQALNCPRCD SPNTKFCYYN NYSLSQPRHF  60
CKTCRRYWTK GGALRNVPIG GGCRKNKKMK TSSSSSRFSG DSKDTISGSS DIGGLKFFHG  120
LSPAMDFQLG GLNFPRLSNN TSTSTVGGNI FNQFSSFGEN STPNIGSTSC FSLDPSGSSS  180
LLGFNNNFPF SSSMLKQGNE GVQEMGSMGV HHGTMASSIE SLSSINQDLH WKLQQQRLSM  240
LFGGENQKEN IISSSIPLHD DQNQNQNQNQ IQIQKPQPIL FQNLEISSSK QQEDHQETFG  300
NNNVDSRKDC STTIGSHHGN NLSTEWFFDN SFGVNPNSTH SNNNNNNNGN GNANDDQNVN  360
NWNSIQAWSN LNQYSTLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057285.10.0dof zinc finger protein DOF5.7
TrEMBLA0A3Q7IS930.0A0A3Q7IS93_SOLLC; Uncharacterized protein
STRINGSolyc11g010940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52422234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.16e-51Dof family protein