PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g005120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 296aa    MW: 34171.3 Da    PI: 6.9527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g005120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-1497148155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Sopen11g005120.1  97 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 148
                       79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1796169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.23E-1396152No hitNo description
PROSITE profilePS5088815.81596147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1197148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1397163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALETVVFQQ DPFNYSHKDC NFYNLETFHD YGNFGYEGYN WNSSIPQSYN DDDNNNNNNN  60
NNSSPDKYFP VESTVVSGRR KRRRTKCAKN EEEIHNQRMT HIAVERNRRR QMNDYLAVLR  120
SLMPPSYAQR GDQASIVGGA INFVKELEQL LQFLEAHKQV ITTHQRHIQY SPFSKFFTFP  180
QYFTSNNNHP LAAATSNEGS EERRSAVADI EVTMVESHAN VKVLSRRRPK QLLKIVNWLQ  240
AMCLTILHLS VTTADHMVLY TFSVKVEENC ELNTVSEIAS AVHEMVAMIK EEAMSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983RKRRR
27984RKRRRT
397108RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057803.10.0transcription factor bHLH96-like
SwissprotQ9C7T48e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3Q7IQW00.0A0A3Q7IQW0_SOLLC; Uncharacterized protein
STRINGSolyc11g010340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]