 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen11g003870.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 419aa MW: 46911.8 Da PI: 5.57 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen11g003870.2 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.8 | 1.8e-52 | 37 | 164 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
l+pGfrFhPtdeelv +yL++k+ gk++++ e+++e+d+yk+ePwdL+ +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++
Sopen11g003870.2 37 LAPGFRFHPTDEELVRYYLRRKACGKPFRV-EAVAEIDVYKSEPWDLRdySALKTRDLEWYFFSPVDRKYGNGSRLNRATGEGYWKATGKDRH 128
579***************************.89**************85347777888*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
v + k++++g+kktLvf+kgrap+ge+t+Wvmheyrl
Sopen11g003870.2 129 VSH-KSKNIGMKKTLVFHKGRAPDGERTNWVMHEYRL 164
**9.9999***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MEQEGALVLA PAPVGPVQPV PPVAPRRAVG VFSATSLAPG FRFHPTDEEL VRYYLRRKAC 60
GKPFRVEAVA EIDVYKSEPW DLRDYSALKT RDLEWYFFSP VDRKYGNGSR LNRATGEGYW 120
KATGKDRHVS HKSKNIGMKK TLVFHKGRAP DGERTNWVMH EYRLDDKELE AAGVVQDAFV 180
LCRIFQKSGL GPPNGDRYAP FIEEEWDDDT APLVAGGVTE DGVANGDEAR VEGNEFDQVI 240
LSLSLTVGCP KQDVRGKAPC ISENLFEPRA LSFVCKRERS EDLELLSLSQ SKRSKHDDPS 300
SSHANGSEDS TTSQQDPPTK TMTTTYSPTL LTFPLLDEPK EAPPTNSFNF DSSNLEKSVP 360
PGYLKFISNL ENQILNVSME RETAKIEVMR AQAMINILQS RLDFLNKENE DLRGLIRRG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-51 | 32 | 187 | 15 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ513289 | 0.0 | JQ513289.1 Solanum lycopersicum NAM-like protein (NLP) mRNA, complete cds. |
