PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g003870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 405aa    MW: 45472 Da    PI: 5.4037
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g003870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52371641128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtdeelv +yL++k+ gk++++ e+++e+d+yk+ePwdL+  +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++
  Sopen11g003870.1  37 LAPGFRFHPTDEELVRYYLRRKACGKPFRV-EAVAEIDVYKSEPWDLRdySALKTRDLEWYFFSPVDRKYGNGSRLNRATGEGYWKATGKDRH 128
                       579***************************.89**************85347777888*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v + k++++g+kktLvf+kgrap+ge+t+Wvmheyrl
  Sopen11g003870.1 129 VSH-KSKNIGMKKTLVFHKGRAPDGERTNWVMHEYRL 164
                       **9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-6333187IPR003441NAC domain
PROSITE profilePS5100558.05437187IPR003441NAC domain
PfamPF023654.0E-2839164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEQEGALVLA PAPVGPVQPV PPVAPRRAVG VFSATSLAPG FRFHPTDEEL VRYYLRRKAC  60
GKPFRVEAVA EIDVYKSEPW DLRDYSALKT RDLEWYFFSP VDRKYGNGSR LNRATGEGYW  120
KATGKDRHVS HKSKNIGMKK TLVFHKGRAP DGERTNWVMH EYRLDDKELE AAGVVQDAFV  180
LCRIFQKSGL GPPNGDRYAP FIEEEWDDDT APLVAGGVTE DGVANGDEAR VEGNEFDQDV  240
RGKAPCISEN LFEPRALSFV CKRERSEDLE LLSLSQSKRS KHDDPSSSHA NGSEDSTTSQ  300
QDPPTKTMTT TYSPTLLTFP LLDEPKEAPP TNSFNFDSSN LEKSVPPGYL KFISNLENQI  360
LNVSMERETA KIEVMRAQAM INILQSRLDF LNKENEDLRG LIRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-523218715168NAC domain-containing protein 19
3swm_B7e-523218715168NAC domain-containing protein 19
3swm_C7e-523218715168NAC domain-containing protein 19
3swm_D7e-523218715168NAC domain-containing protein 19
3swp_A7e-523218715168NAC domain-containing protein 19
3swp_B7e-523218715168NAC domain-containing protein 19
3swp_C7e-523218715168NAC domain-containing protein 19
3swp_D7e-523218715168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ5132890.0JQ513289.1 Solanum lycopersicum NAM-like protein (NLP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058199.10.0NAC domain containing protein 50-like isoform X2
TrEMBLA0A345CM810.0A0A345CM81_SOLHA; NAC transcription factor 1
STRINGSolyc11g008010.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.25e-93NAC domain containing protein 50