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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g002170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 360aa MW: 41288.4 Da PI: 9.7849 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 119 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L++H + H Sopen11g002170.1 119 YICRVCGRRFYTNEKLVNHFKQiH 142 89*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.61E-5 | 115 | 145 | No hit | No description |
SMART | SM00355 | 0.0055 | 119 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.196 | 119 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 121 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.40.50.1010 | 1.3E-7 | 121 | 168 | IPR029060 | PIN domain-like |
CDD | cd06167 | 4.24E-12 | 185 | 271 | No hit | No description |
Pfam | PF01936 | 2.4E-8 | 191 | 272 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 1.3E-7 | 204 | 276 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MMNCVKVSSF IHAIRFYKRF CHFESKSHLG FGSLDSPIRA SVGIFWDLDN KPPKSFPPFD 60 AATKLKKAAG QFGVVRFTVA YANRHAFSYV PPLVRQQRKE RKTLNLLEKS GVVKVEDPYI 120 CRVCGRRFYT NEKLVNHFKQ IHEREQTKRL NQIESARGKM RVKLVAKYAM KMDKYKGAVR 180 DVLTPKVGYG LADDLKRAGF WVRTVSDKPQ AADIALRNHL VDVMDKRMVD YVVLVSDDSD 240 FVEVLKEARL RCLKTVVVGD SNDGALKRTA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV 300 LKRLEWTYDP EVEKKLYYSE VESDDSDGIF SGEDKEDVDA SISKEDAHAW WKLDSRSGHD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015056816.1 | 0.0 | uncharacterized protein LOC107003083 | ||||
Refseq | XP_015056817.1 | 0.0 | uncharacterized protein LOC107003083 | ||||
TrEMBL | M0ZKC8 | 0.0 | M0ZKC8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002602 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12125 | 19 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-136 | C2H2 family protein |