PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g001860.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 680aa    MW: 75542.9 Da    PI: 4.5458
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g001860.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.35.3e-4841311128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtd el+++yLk+k++gkkl++ e i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyWk+tgkd++
  Sopen11g001860.2   4 LPPGFRFHPTDVELIMYYLKRKITGKKLHF-EGITELNIYKFSPWDLPdKcCYKSKDLEWYFFCPRERKYASGARMNRATDTGYWKTTGKDRP 95 
                       79**************************99.78***************6545666777*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+   ++ vg  ktLvf+ g+ p+g++tdWv+hey++
  Sopen11g001860.2  96 VTY-CEKSVGSVKTLVFHLGHPPRGKRTDWVIHEYKF 131
                       ***.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-562154IPR003441NAC domain
PROSITE profilePS5100554.0574154IPR003441NAC domain
PfamPF023653.4E-245130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MARLPPGFRF HPTDVELIMY YLKRKITGKK LHFEGITELN IYKFSPWDLP DKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATDTGYWKTT GKDRPVTYCE KSVGSVKTLV FHLGHPPRGK  120
RTDWVIHEYK FEDKESIDAG FAQDSYVLCK VFQKSGPGPK NGAQYGAPFK EEDWEDDKIP  180
AEPCTSDVFP APPGRTDKPS SSNAIRMVDP RSTSDWTSSE QSPSPIQPSV QKLPLDEPDD  240
EELPGEPNLS NVSSINWRPS DQLKAKPSNT FSALPILPEE QSCSVDTGLV NPGPGPSNAQ  300
MCTNEMALDD IDDEMIGLFA PFTEDTSLLS GGNEPNQKLE NFHQEVNAPP AACTDGNDIF  360
DGLGDIEFWA GVGQLEPDLT ASGGANYSLN PVILPQEAPQ DAAYMELNDL DIPLNHPAET  420
IGTGQLVPGY LCTPYNSDNG MQQLCFGSNS LGIVQHFGEH HLPALPESYT QQVNHPDMAY  480
NFQNNPNQGY NAATNFSVSS YKQPEDRRLD SQNLERGVQQ QKFYLSIFAL CDGSFLLVKA  540
EVTLGVDGCT NDALSVILGE QRKLYLSIFA FCGGSFILVK AEVTLGVDGC TNDALSVILG  600
NPSFTFTRVS NVDKADFSKK THETFCFGFS LAFIRFSCVG MLWLNSLWEL YQFIVFKILL  660
NQVQFNSSGT LFIFIFISAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-45415415168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136830.0BT013683.1 Lycopersicon esculentum clone 132505F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058664.10.0NAC domain-containing protein 82-like
RefseqXP_015058665.10.0NAC domain-containing protein 82-like
TrEMBLA0A3Q7IPB70.0A0A3Q7IPB7_SOLLC; Uncharacterized protein
STRINGSolyc11g005920.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-82NAC domain containing protein 82