PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g001740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 269aa    MW: 31032.5 Da    PI: 6.2668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g001740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08156196954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sopen11g001740.1 156 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 196
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-13153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-11153201No hitNo description
PfamPF000108.0E-6157196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSNMDNQQVF RDQQQQQQQQ PCLSSIPNDH IYHEHHHQQQ QFHFEPNPIW PSFPLQNPQH  60
HHLPSSSIQQ QQQQQQQQEQ VVPFDHVLNN HVQTLIEDQE HDDQDEDEEE EEELGAMKEM  120
MFKIASMQPV DIDPSTIRKP KRRNVRISND PQSVAARLRR ERISEKIRIL QRLVPGGTKM  180
DTASMLDEAI RYVKFLKRQI RHLQSSNHNL PPAQIPVSSC PNNENWANNI VTPSTKGLIL  240
GSSSSTTTNN VTTFVGNTTL DPPYAVIGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058044.10.0transcription factor HEC3-like
TrEMBLA0A0V0HMN21e-136A0A0V0HMN2_SOLCH; Putative transcription factor HEC3-like
STRINGSolyc11g005780.1.11e-131(Solanum lycopersicum)
STRINGPGSC0003DMT4000737601e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-44bHLH family protein