 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen11g001390.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
Trihelix |
| Protein Properties |
Length: 494aa MW: 56389.4 Da PI: 8.2523 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen11g001390.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 94.2 | 1.2e-29 | 53 | 136 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+++e+laL+++r+em+ ++r+++lk plW+e+s+km+e g++r++k+C+ek+en+ k++k++k+g+++r ++ +++++f+qle
Sopen11g001390.1 53 RWPHEETLALLKIRSEMDVAFRDSNLKSPLWDEISRKMAELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQLE 136
8********************************************************************97..56668******97 PP
|
| 2 | trihelix | 96.1 | 3.1e-30 | 364 | 449 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k ev aLi++r++++ ++++ g++k+plWe++s m++ g+ r++k+Ckekwen+nk+y+++ke++kkr +++s+tcpyf+ql+
Sopen11g001390.1 364 RWPKAEVEALIKLRTNVDLQYQDnGSSKGPLWEDISCGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKKR-PQDSKTCPYFHQLD 449
8*********************7589*********************************************8.99**********98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 494 aa
Download sequence Send
to blast |
MLESSVLLEN TATGGAVTGA DGEAAELKNE GGGGGSVGGG SEEEDKNFSG GNRWPHEETL 60
ALLKIRSEMD VAFRDSNLKS PLWDEISRKM AELGYNRNAK KCREKFENIY KYHKRTKDGR 120
SGRQTGKNYR FFEQLELLDS QSLFSSPPLN HSQINRMETM PVPMPMPMTM IKPAASGCQD 180
FRMDHSRVRG FNPGFMYTST STTSSSGKES DGSVKKKRKL ASYFERLMKE VLDKQEDLQN 240
KFLEAMEKCE KDRIARDDAW KMQEIARLKK EQEALAHERA ISAAKDAAVI AFLQKISDQT 300
IQLQLPTDLP HRHTEERESE SMKTIGNQEN VVMQQDNDKE NIEKQEIDSA GENSNSFQTN 360
SSSRWPKAEV EALIKLRTNV DLQYQDNGSS KGPLWEDISC GMKKLGYDRN AKRCKEKWEN 420
INKYYRRVKE SQKKRPQDSK TCPYFHQLDS IYQNKSKKQL PIMETPGSNM KAGEILMQII 480
NQQQQQQALE RTEC
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
