PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g001390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 494aa    MW: 56389.4 Da    PI: 8.2523
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g001390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.21.2e-2953136186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+++e+laL+++r+em+ ++r+++lk plW+e+s+km+e g++r++k+C+ek+en+ k++k++k+g+++r  ++ +++++f+qle
  Sopen11g001390.1  53 RWPHEETLALLKIRSEMDVAFRDSNLKSPLWDEISRKMAELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQLE 136
                       8********************************************************************97..56668******97 PP
2trihelix96.13.1e-30364449186
          trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+k ev aLi++r++++ ++++ g++k+plWe++s  m++ g+ r++k+Ckekwen+nk+y+++ke++kkr +++s+tcpyf+ql+
  Sopen11g001390.1 364 RWPKAEVEALIKLRTNVDLQYQDnGSSKGPLWEDISCGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKKR-PQDSKTCPYFHQLD 449
                       8*********************7589*********************************************8.99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-450112IPR001005SANT/Myb domain
PfamPF138372.3E-2052136No hitNo description
PROSITE profilePS500907.44552110IPR017877Myb-like domain
CDDcd122032.00E-2452117No hitNo description
SMARTSM007171.9361424IPR001005SANT/Myb domain
PfamPF138374.0E-23363451No hitNo description
CDDcd122037.68E-22363429No hitNo description
PROSITE profilePS500906.679363422IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MLESSVLLEN TATGGAVTGA DGEAAELKNE GGGGGSVGGG SEEEDKNFSG GNRWPHEETL  60
ALLKIRSEMD VAFRDSNLKS PLWDEISRKM AELGYNRNAK KCREKFENIY KYHKRTKDGR  120
SGRQTGKNYR FFEQLELLDS QSLFSSPPLN HSQINRMETM PVPMPMPMTM IKPAASGCQD  180
FRMDHSRVRG FNPGFMYTST STTSSSGKES DGSVKKKRKL ASYFERLMKE VLDKQEDLQN  240
KFLEAMEKCE KDRIARDDAW KMQEIARLKK EQEALAHERA ISAAKDAAVI AFLQKISDQT  300
IQLQLPTDLP HRHTEERESE SMKTIGNQEN VVMQQDNDKE NIEKQEIDSA GENSNSFQTN  360
SSSRWPKAEV EALIKLRTNV DLQYQDNGSS KGPLWEDISC GMKKLGYDRN AKRCKEKWEN  420
INKYYRRVKE SQKKRPQDSK TCPYFHQLDS IYQNKSKKQL PIMETPGSNM KAGEILMQII  480
NQQQQQQALE RTEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058123.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-125TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3Q7IP070.0A0A3Q7IP07_SOLLC; Uncharacterized protein
STRINGSolyc11g005380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-119Trihelix family protein