PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g031850.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 348aa MW: 38194.9 Da PI: 9.2236

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g031850.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.9	6.8e-16	278	320	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lk Sopen10g031850.1 278 RRQKRMIKNRESAARSRARKQAYTHELENKVSRLEEENERLKR 320 79*************************************9993 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.5E-16	269	321	No hit	No description
SMART	SM00338	1.8E-14	274	346	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.634	276	321	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.0E-13	278	321	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.19E-11	278	323	No hit	No description
CDD	cd14707	7.71E-25	278	323	No hit	No description
PROSITE pattern	PS00036	0	281	296	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGSQGGGGGG GGGVGVNSIG VTQAQAQAHA QDPKTNALAR QGSLYSLTLD EVQNQLGDLG 60 KPLSNMNLDE LLKTVWTVEA SQGMGGTDYG VLQHGQDASG SSLNRQSSIT LTSDLSKKTV 120 DQVWQDIQQG HKRDRIDRKA QERQPTLGEM TLEDFLVKAG VVAESTPGKK SLGSVLGVDS 180 MALPQQQAQW SQYQMQAMHP LPPQQHQQQQ QNMLPVFMPG HSVQQPLTIV SNPTIDAAYP 240 ESQMTMSPTA LLGTLSDTQT LGRKRVAPDD VVEKTVERRQ KRMIKNRESA ARSRARKQAY 300 THELENKVSR LEEENERLKR QKEIEQVLPS VPLPEPKYQL RRTSSAPF

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGSQGGGGGG GGGVGVNSIG VTQAQAQAHA QDPKTNALAR QGSLYSLTLD EVQNQLGDLG  60
KPLSNMNLDE LLKTVWTVEA SQGMGGTDYG VLQHGQDASG SSLNRQSSIT LTSDLSKKTV  120
DQVWQDIQQG HKRDRIDRKA QERQPTLGEM TLEDFLVKAG VVAESTPGKK SLGSVLGVDS  180
MALPQQQAQW SQYQMQAMHP LPPQQHQQQQ QNMLPVFMPG HSVQQPLTIV SNPTIDAAYP  240
ESQMTMSPTA LLGTLSDTQT LGRKRVAPDD VVEKTVERRQ KRMIKNRESA ARSRARKQAY  300
THELENKVSR LEEENERLKR QKEIEQVLPS VPLPEPKYQL RRTSSAPF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088864.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-97	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A3Q7IL08	0.0	A0A3Q7IL08_SOLLC; Uncharacterized protein
STRING	Solyc10g081350.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-96	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]