PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g031310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 447aa    MW: 49225.9 Da    PI: 8.4386
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g031310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-11161202546
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                       k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  Sopen10g031310.1 161 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 202
                       7789*************************9999998888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-8157220IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358159203IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-6161205No hitNo description
CDDcd147083.40E-21161212No hitNo description
PfamPF001704.8E-8161203IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-8162207No hitNo description
PROSITE patternPS000360164179IPR004827Basic-leucine zipper domain
PfamPF141441.2E-33243318IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPSFISQIPV SKNHMGTEGN NTNTSRMSEF GVLEQYLGFR IGDGVNVNRS PLFNSTSAAN  60
PAVGFDVSGT INRNLAPSNT SLSTAAPGSH VIQLQSNLVP AAGTHPENWG ESNMADSGSR  120
TDTSTDMDGD DRNQRIETGQ SRAIAASDSS DKSKEKVLDQ KTLRRLAQNR EAARKSRLRK  180
KAYVQQLENS RLKLSQLEQD LQRARQQGKY ISNMADQSNG AGASGTLAFD AEYSRWLEEH  240
NKHINELRTA VNSHASDPEL RSIVNNVTAH YDEVFRVKGN AAKADVFHVL SGMWKTPAER  300
CFMWIGGFRP SELLKLLVNQ LEPLTEQQLA GIYNLQQSSH QAEDALSQGM EALQQSLAET  360
LANGSPATEG SSGDVANYMG QMAMAMGKLG TLEGFLRQAD NLRQQTLQQM HRILTTRQSA  420
RALLAISEYF SRLRALSSLW LARPREQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3869460.0GQ386946.1 Capsicum annuum leucine zipper transcription factor TGA (TGA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296800.10.0TGACG-sequence-specific DNA-binding protein TGA-2.1
RefseqXP_015055987.10.0TGACG-sequence-specific DNA-binding protein TGA-2.1 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A3Q7IKP60.0A0A3Q7IKP6_SOLLC; Uncharacterized protein
STRINGSolyc10g080770.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-152TGACG motif-binding factor 6