PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g031020.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 289aa    MW: 30361.3 Da    PI: 9.3354
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g031020.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-063659225
                      -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                      k ++C  f+ t  C++G++C+F H
  Sopen10g031020.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                      7789******************** PP
2zf-CCCH31.23.6e-1097122227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC++f+    Ck+Gd+C++aHg+
  Sopen10g031020.1  97 KTKLCNRFSTAEGCKFGDKCNYAHGE 122
                       9***********************96 PP
3zf-CCCH37.53.8e-12257280226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       kt+lC +fa+ G C +GdrC+FaHg
  Sopen10g031020.1 257 KTKLCENFAK-GSCTFGDRCHFAHG 280
                       9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-63560IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-83659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-894126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-1394127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.19295123IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-495122IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-797122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-15155233IPR004088K Homology domain, type 1
SMARTSM003229.3E-13161231IPR004087K Homology domain
PROSITE profilePS5008414.739162226IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-16163231IPR004088K Homology domain, type 1
PfamPF000137.0E-12164228IPR004088K Homology domain, type 1
CDDcd001051.21E-14164226No hitNo description
Gene3DG3DSA:4.10.1000.101.4E-15253286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8254285IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.22255282IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9257280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDYRKRTRND VGANVNGGVK KYKPEVDSIS GGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYSAATQ MMKLTPAPSL RNAAAPPNSN GNAPSLKTKL CNRFSTAEGC KFGDKCNYAH  120
GEWELGKPTI PSQEDPRAMG FGSMPVRFGG GRVEPAANFG TSATAKISVD ASLAGAIIGK  180
GGVNSKQICR QTGAKLAIRD HETDADLRNI ELEGTFEQIS QASAMVRELI NSLGPVGGGG  240
RTHGNSGGPA PPMNNLKTKL CENFAKGSCT FGDRCHFAHG AAELRKTGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088937.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-100C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7IL210.0A0A3Q7IL21_SOLLC; Uncharacterized protein
STRINGSolyc10g080480.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-83C3H family protein