PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g030850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 461aa MW: 50918.1 Da PI: 8.3923 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.2e-07 | 43 | 63 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Sopen10g030850.1 43 PCPEFRK-GACQRGDMCEYAHG 63 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.0E-5 | 38 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-4 | 41 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-5 | 43 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.568 | 43 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 54 | 73 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MFSFKIRPCS RAYSHDWTEC PFLHPGENAR RRDPRKYHYS CVPCPEFRKG ACQRGDMCEY 60 AHGVFECWLH PAQYRTRLCK DGIDCNRRVC FFAHKQDDLR PLYVSTGSAV PSPCGNSAAV 120 NAMDFAAAMG LIPGSPSSVS VMSPSPFTPP VSPSANGISS MGWAQRNAPP LHLPGSFVHS 180 SRLRSSLSAR GIPAADLSTC PDFDVQRQQF LNEFSCLSQR NSMSSDSLNH SARPMTFTRA 240 NIEDYFPAES SSPRFSDRTV AQSVFSPTHK SAVCSPFQQQ QQNLLSPINT NFSPRNIDNP 300 LLQASFGVPS SGKMSPRAME PISPRNSRVS ILAQRDRQQQ FRSLSSRDLG SNVSAIVGSP 360 TDTWLKWGTD VGKPDWAVNT EELGRLRQSS SFKLANNGKE PDLSWVQSLV KESPPEMMKD 420 KCVRHVSEPE LTGAGADLGE GSTSHSQIDQ LSAWMETKNT N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249271.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q10EL1 | 1e-170 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A3Q7IKM2 | 0.0 | A0A3Q7IKM2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g080260.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-140 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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