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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g030310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26248.6 Da PI: 8.615 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.3e-13 | 91 | 145 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er+RR+++N +++Lr+llP+++ k ++kKls +++ + eYI +L Sopen10g030310.1 91 KKLNHNASERNRRKKMNFLYSTLRSLLPPPTnKHQKKKLSFPATVSYVQEYIPEL 145 6789*************************665888888**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.94E-13 | 90 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-11 | 90 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.986 | 90 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.77E-8 | 90 | 150 | No hit | No description |
Pfam | PF00010 | 1.4E-10 | 91 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-6 | 96 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLAFSSSNMF PTMNSIAWSF EEPLCYDDHH KNTTPITTPQ FQTDQNNKLF EGLRADNTIE 60 LPLSHHHQQQ CLKESEFDVD ELGVERSLME KKLNHNASER NRRKKMNFLY STLRSLLPPP 120 TNKHQKKKLS FPATVSYVQE YIPELKKEIE RLSKRKDFLL SKKSNYSLLK IDDNNKRKLI 180 IGGTSCNSST TSICASQLSN TQVLLAFSDA RTNRNGHSDF EDEAFSNV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055301.1 | 1e-151 | transcription factor bHLH100-like | ||||
TrEMBL | A0A3Q7IL29 | 1e-140 | A0A3Q7IL29_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g079680.1.1 | 7e-75 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04150.1 | 4e-22 | bHLH family protein |