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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g029760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 76732.1 Da PI: 6.96 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.9e-07 | 280 | 300 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Sopen10g029760.1 280 PCPEFRK-GACRRGDMCEYAHG 300 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 5.3E-20 | 11 | 162 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.29E-19 | 16 | 139 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.2E-11 | 55 | 128 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.19E-17 | 59 | 137 | No hit | No description |
SMART | SM00248 | 8.0E-4 | 59 | 89 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.988 | 59 | 135 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 3.9E-5 | 60 | 75 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.823 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.9E-4 | 94 | 126 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.9E-5 | 113 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.5E-6 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 280 | 302 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 280 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 308 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 54 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MNMNHLTVET EDTLASLLEI ASNNDIDAFK RWIEHDLSSI HEVGMWYGRQ KGTRQMVLEH 60 RTPLMVAAMY GSIDVLKLIL SLAGVDVNRS CGRDNSTALH CAASGGSLNA VEAVKLLLEA 120 GADPNFKDAY GHRPLDVLVT SLKDHTIKSC LENLLKTDGM GDCNLRVSMA SSNSNSPPLS 180 PSLGNISPSS ASDTTSSPRS AKSSDLPVPS PPEKKEYPID PSLPDIKNSI YSTDEFRMFS 240 FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HMQEELRPLY MSTGSAVLSP RSNASAANAM 360 DFAAAMGLIP GSPSSVSVMS PSPFTPPMSP SANGVSNMGW PPQNVPALHL PGSNLQSSRL 420 RSSLNARDIP AKDLTMLSDF DVQQQQLLNG LSCLSQSSTH ANSFNRSVRP KTLAPSNLED 480 LFSAEGSSPR FSDQALSQAV FSPTHKSAVF NQYLQQQKAM LSPINTNFSP RNVDNPMLQG 540 SFGVPSSRSM SPRGMEPISP MSSRVSMLAQ GDKQHQFRSL SSRDLGSSAA SAIAGSPSDT 600 WSNWGIAPGK PDWAVNSEEF GRLRRSSSFE LANNGEEPDL SWVQSLVKES PQEAKNKSAS 660 RVSGLTDSGA DITEGSTSGS QIEQYDQLGA WMEQMKLDQL IAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055611.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_015055612.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_015055613.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A0V0IT35 | 0.0 | A0A0V0IT35_SOLCH; Putative zinc finger CCCH domain-containing protein 30-like | ||||
STRING | Solyc10g079120.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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