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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g029370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 293aa MW: 30534.5 Da PI: 9.6278 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1.1e-07 | 36 | 60 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt++C f+ t C++G++C+F H Sopen10g029370.1 36 KTKPCTKFFSTAGCPFGESCHFLHH 60 9***********************6 PP | |||||||
2 | zf-CCCH | 29.4 | 1.4e-09 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd C+FaHg+ Sopen10g029370.1 97 KTKLCNKFNTAEGCKFGDACNFAHGE 122 8***********************96 PP | |||||||
3 | zf-CCCH | 39.3 | 1.1e-12 | 260 | 284 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +GdrC+FaHg Sopen10g029370.1 260 YKTKLCENFAK-GSCTFGDRCHFAHG 284 9**********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.069 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.432 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-6 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-6 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-12 | 93 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-7 | 94 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.657 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-7 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.19E-15 | 161 | 237 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.3E-12 | 165 | 235 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.781 | 166 | 230 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.5E-16 | 166 | 235 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 8.7E-12 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.50E-14 | 168 | 230 | No hit | No description |
SuperFamily | SSF90229 | 6.93E-9 | 257 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-16 | 257 | 290 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-8 | 259 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.309 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 260 | 284 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDFRKRSRNG AGSNFNGGLK KSKPEMDSLS GGIGSKTKPC TKFFSTAGCP FGESCHFLHH 60 VPGGYNAVAQ MMNLGSAPAS RNVAAPPMSN GNAPAVKTKL CNKFNTAEGC KFGDACNFAH 120 GEWQIGKPIV PSQEDPRAMG VGHAPSRFGG RTEPAVSGSA ASFGTTATAK ISVDASLAGA 180 IIGKGGVNSK QICRQTGAKL AIREHETDTN LRNIELEGTF EQISQASAMV RELINSLGPV 240 GGPGRDPAGR GGPAPPMNNY KTKLCENFAK GSCTFGDRCH FAHGDAEMRK TGA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088849.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-106 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A3Q7IK94 | 0.0 | A0A3Q7IK94_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g078750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-81 | C3H family protein |