PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 260aa    MW: 29745.2 Da    PI: 6.7137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-1175121354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riNs ++ Lr+ll  +      Kl+Ka+ L k+v+ +++L
  Sopen10g029040.1  75 ENHKEAERRRRERINSHLHSLRTLLSCN-----SKLDKASLLAKVVQRVREL 121
                       79***********************997.....7************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1369130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1271133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.62472121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-975121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1078127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQQQQDFQEN LESCNYFSKN KSSSSDNNMM GEYYGFDIEA IKNFCSSSPF YPQHNHVEFQ  60
ETIESNNNSP ESRAENHKEA ERRRRERINS HLHSLRTLLS CNSKLDKASL LAKVVQRVRE  120
LKEQTSQIMQ SETNLLFPSE TDEITVLSSN DCLADGRLLI KASLCCEDRF DLIPDLIETL  180
KSLGLSPIRA EMVTLGGRIH NVIVLAVDHN KESNNNNTDH DESSLLFLRD ALRSIVQRSS  240
YGTGERGKRR RVLGQGTRKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17284RAENHKEAERRRR
28085ERRRRE
3247251KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055246.10.0transcription factor bHLH106
SwissprotO806743e-51BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A3Q7IKB90.0A0A3Q7IKB9_SOLLC; Uncharacterized protein
STRINGSolyc10g078380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.19e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]