PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g028790.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 372aa    MW: 42929.7 Da    PI: 7.7387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g028790.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.6e-066585323
                      ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                      C+ Cg +F  + +Lk+H+++H
  Sopen10g028790.3 65 CEECGATFQKPAHLKQHMQSH 85
                      *******************99 PP
2zf-C2H217.79.6e-0691115123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+  dC  s++rk++L rH+ +H
  Sopen10g028790.3  91 FVCHidDCQSSYRRKDHLSRHLLLH 115
                       89********************998 PP
3zf-C2H214.10.00014120145123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++Cp   C+ +Fs + n++rH +  H
  Sopen10g028790.3 120 FECPvdGCKSTFSFQGNMTRHVKEmH 145
                       89********************9988 PP
4zf-C2H219.92e-06159183123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y+C+   Cgk+F+  s L++H  +H
  Sopen10g028790.3 159 YVCSeaGCGKVFKYASKLRKHEDSH 183
                       99*******************9888 PP
5zf-C2H220.61.2e-06250274223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+  dC+ +Fs++snL +Hi+  H
  Sopen10g028790.3 250 KCEfqDCPHTFSTRSNLAQHIKAvH 274
                       79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355261941IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.54E-1061115No hitNo description
PROSITE profilePS5015713.5056390IPR007087Zinc finger, C2H2
SMARTSM003550.00526385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-86590IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.68191120IPR007087Zinc finger, C2H2
SMARTSM003550.06391115IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-1091117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-5101145No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5118146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0031120145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286120150IPR007087Zinc finger, C2H2
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-7156183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.07E-5157183No hitNo description
SMARTSM003550.001159183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.406159188IPR007087Zinc finger, C2H2
PROSITE patternPS000280161183IPR007087Zinc finger, C2H2
SMARTSM003556191216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193216IPR007087Zinc finger, C2H2
SMARTSM0035521219240IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.05E-9231287No hitNo description
PROSITE profilePS5015713.422249279IPR007087Zinc finger, C2H2
SMARTSM003550.001249274IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-6250276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280251274IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-5277302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.6280306IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280282306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGEVGEEKRE VVFRDIRRYY CEFCGLCRSK KSLISSHIQS HHQDEIESRK DDATENAKGS  60
KMNICEECGA TFQKPAHLKQ HMQSHSLERP FVCHIDDCQS SYRRKDHLSR HLLLHQGKLF  120
ECPVDGCKST FSFQGNMTRH VKEMHDQPAS ADVDLPKEYV CSEAGCGKVF KYASKLRKHE  180
DSHVQLETVE AMCLEPGCMK HFTNEKCLKE HIESCHQHID CEICGTKQLK KNIKRHLRTH  240
EEGPTSERIK CEFQDCPHTF STRSNLAQHI KAVHVGSKPF SCSISGCGMK FAFKHVRDKH  300
EQSGCHIYTP GDFEEVDEQF LSRPRGGRKR EPTLFESIMR KRITPPSGID PVFNQTPEYL  360
SWLRSMESDN QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-176121111155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-176121111155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8821790.0DQ882179.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055634.10.0transcription factor IIIA
SwissprotQ84MZ41e-142TF3A_ARATH; Transcription factor IIIA
TrEMBLQ06HM70.0Q06HM7_SOLLC; Transcription factor IIIA
STRINGSolyc10g077110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-133transcription factor IIIA