PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g028790.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 287aa    MW: 33137.7 Da    PI: 7.7933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g028790.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.9e-06630123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      ++C+  dC  s++rk++L rH+ +H
  Sopen10g028790.2  6 FVCHidDCQSSYRRKDHLSRHLLLH 30
                      89********************998 PP
2zf-C2H214.69.8e-053560123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      ++Cp   C+ +Fs + n++rH +  H
  Sopen10g028790.2 35 FECPvdGCKSTFSFQGNMTRHVKEmH 60
                      89********************9988 PP
3zf-C2H220.31.5e-067498123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      y+C+   Cgk+F+  s L++H  +H
  Sopen10g028790.2 74 YVCSeaGCGKVFKYASKLRKHEDSH 98
                      99*******************9888 PP
4zf-C2H2218.7e-07165189223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+  dC+ +Fs++snL +Hi+  H
  Sopen10g028790.2 165 KCEfqDCPHTFSTRSNLAQHIKAvH 189
                       79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-7232No hitNo description
Gene3DG3DSA:3.30.160.603.7E-10232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.681635IPR007087Zinc finger, C2H2
SMARTSM003550.063630IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-53361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.79E-53361No hitNo description
PROSITE profilePS501579.2863565IPR007087Zinc finger, C2H2
SMARTSM003550.00313560IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803760IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-77198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.55E-57298No hitNo description
SMARTSM003550.0017498IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.40674103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807698IPR007087Zinc finger, C2H2
SMARTSM003556106131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108131IPR007087Zinc finger, C2H2
SMARTSM0035521134155IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.04E-9146202No hitNo description
SMARTSM003550.001164189IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.422164194IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-6165191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-5192217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.6195221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MQERPFVCHI DDCQSSYRRK DHLSRHLLLH QGKLFECPVD GCKSTFSFQG NMTRHVKEMH  60
DQPASADVDL PKEYVCSEAG CGKVFKYASK LRKHEDSHVQ LETVEAMCLE PGCMKHFTNE  120
KCLKEHIESC HQHIDCEICG TKQLKKNIKR HLRTHEEGPT SERIKCEFQD CPHTFSTRSN  180
LAQHIKAVHV GSKPFSCSIS GCGMKFAFKH VRDKHEQSGC HIYTPGDFEE VDEQFLSRPR  240
GGRKREPTLF ESIMRKRITP PSGIDPVFNQ TPEYLSWLRS MESDNQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-12312640155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-12312640155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8821800.0DQ882180.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055634.10.0transcription factor IIIA
SwissprotQ84MZ41e-109TF3A_ARATH; Transcription factor IIIA
TrEMBLQ06HM70.0Q06HM7_SOLLC; Transcription factor IIIA
STRINGSolyc10g077110.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-112transcription factor IIIA