PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g026890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 266aa    MW: 30112.7 Da    PI: 7.0004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g026890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000181033123
                      EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                      ++C  Cgk Fs+   L  H+++ H
  Sopen10g026890.1 10 HTCCECGKEFSSGKALGGHMSSaH 33
                      79******************9988 PP
2zf-C2H214.10.000148099221
                      EETTTTEEESSHHHHHHHHH CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                      +C++C+k F++k +L  H+r
  Sopen10g026890.1 80 SCEICHKNFPSKKSLFGHMR 99
                      6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.83E-8832No hitNo description
PfamPF139121.6E-71033IPR007087Zinc finger, C2H2
SMARTSM003550.261033IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8891038IPR007087Zinc finger, C2H2
PROSITE patternPS0002801233IPR007087Zinc finger, C2H2
SuperFamilySSF576673.83E-874101No hitNo description
SMARTSM003550.02479101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.74379106IPR007087Zinc finger, C2H2
PfamPF139121.6E-681103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLLMKQKKDH TCCECGKEFS SGKALGGHMS SAHVQANQRL EESLKKKKSL IKRSRIDDYD  60
DDDEKVVLEE EEEMGDVVVS CEICHKNFPS KKSLFGHMRC HRDREWRGMK PPRKKISKSK  120
GFDEASFEDV NEGFEDRFAS LRDEEEEDGG GGGGVHFNVV ELPPLKDWGA KDRRGRSPLK  180
RSVSSTIMDD DKELHDAVQQ LINLVNGDVN NNNNNNNRSE VMMSSSNSVG SAPKEAAFHD  240
LKDKSKKKGV VVDDTKEKNR EETKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768146.11e-147zinc finger protein ZAT9-like
TrEMBLQ6L4C01e-135Q6L4C0_SOLDE; Putative zinc finger protein, identical
STRINGPGSC0003DMT4000848051e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-11C2H2 family protein