PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g025660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 572aa    MW: 64576.9 Da    PI: 6.3291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g025660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000475477123
                      EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                      ++C  Cgk Fs+   L  H+++ H
  Sopen10g025660.1 54 HTCCECGKEFSSGKALGGHMSSaH 77
                      79******************9988 PP
2zf-C2H212.80.00035124143221
                       EETTTTEEESSHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                       +C++C+k Fs+k +L  H+r
  Sopen10g025660.1 124 SCEICHKNFSSKKSLFGHMR 143
                       6******************8 PP
3zf-C2H211.90.00069340355116
                       EEETTTTEEESSHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnL 16 
                       ykC+ Cgk+F ++  L
  Sopen10g025660.1 340 YKCNMCGKMFATHQAL 355
                       9*********998876 PP
4zf-C2H212.90.00033401420221
                       EETTTTEEESSHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                       +C++C+k F++k +L  H+r
  Sopen10g025660.1 401 SCEICHKNFPSKKSLIGHMR 420
                       6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8895482IPR007087Zinc finger, C2H2
PfamPF139124.0E-75477IPR007087Zinc finger, C2H2
SMARTSM003550.265477IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805677IPR007087Zinc finger, C2H2
SMARTSM003550.046123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076123150IPR007087Zinc finger, C2H2
SuperFamilySSF576673.23E-8124145No hitNo description
Gene3DG3DSA:3.30.160.609.0E-4124145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.2E-5125147IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SuperFamilySSF576673.23E-8335355No hitNo description
SuperFamilySSF576677.4E-5340362No hitNo description
SMARTSM0035561340357IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.4E-5395422No hitNo description
PROSITE profilePS501579.847400427IPR007087Zinc finger, C2H2
SMARTSM003550.034400422IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-6402424IPR007087Zinc finger, C2H2
PROSITE patternPS000280402422IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MEAEDDQENN GSYEKGLSSS NFKVKINLKL KKDKDKSHGD EEKNMLLMKQ KKDHTCCECG  60
KEFSSGKALG GHMSSAHVQA NQRLEESLKK KKSLIKRSRI DDYDDDDEEV VLEEEEEMGD  120
VVVSCEICHK NFSSKKSLFG HMRCHPDREW RGMKPPSKKI SKSKGFDEAS FEDVNECFED  180
RFASLRDEEQ EDGGGGGGGV HFNVVELPPL KDWGAKDRRG RSPLKRSVSS TIMDDDKELH  240
DAVQQLINLV NGDVNNNNNN NNRSEVMMNS SNSVGSAPKE AAFRDLKDKS KKKGVVVDDT  300
KEKNREETKK RKREKELVKL EPGQDLVPSP VLKKSVEVKY KCNMCGKMFA THQALDHGQL  360
GNQXLKKKKS LIKRSRIDDY DDDDEEVFLE EEEEMGDVVE SCEICHKNFP SKKSLIGHMR  420
CHPDRERRGM KPPSKKISKS KGFDEASFED VNEGFEDRFA SLRDEEEEDG GGGGVHFNVV  480
ELPPLKDWGA KDRRGRSPLK RSVSSTIMDD DKELHDAVQQ LINLVNGDVN NNNNNNNRSE  540
VMMGSSNAVG SAPKEAAFRD LKDKYKKRGG CC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290312KKKGVVVDDTKEKNREETKKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768146.10.0zinc finger protein ZAT9-like
TrEMBLQ6L4C01e-180Q6L4C0_SOLDE; Putative zinc finger protein, identical
STRINGPGSC0003DMT4000848051e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-12C2H2 family protein