PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g025280.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 262aa MW: 28827.5 Da PI: 7.2361

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g025280.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20	1.5e-06	87	130	7	50
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r +N+eA r++ ++Kka ++ Lee+v L N++L ++l+ Sopen10g025280.1 87 KKRPLSNKEAVRKYCEKKKAWVASLEEEVVRLRDINQQLLNRLQ 130 57889**********************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-5	81	148	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	8.0E-9	87	130	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-10	87	149	No hit	No description
CDD	cd14686	1.87E-8	87	140	No hit	No description
SuperFamily	SSF57959	1.13E-5	88	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDDMELEFSS QEVLSSSTFG EIPESSPMNK RFNEILTDVH ACIHAHTCNP PGPHNSHTHT 60 CYHVHTKVVT PPRDDTTAES TAAKVGKKRP LSNKEAVRKY CEKKKAWVAS LEEEVVRLRD 120 INQQLLNRLQ GQAVLEAEVS RLKCLLVDIR GRIAGEIGSF PYHKPMEGAD VYQNLRGTYV 180 MNPCNLQCDD QVYCLQPNSE ESNGQGLDSC GFETLQCSSS QGLKEVPGCA LGFGTPTANT 240 SHGNKKKRTG GKCAHNGKPV NC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055396.1	0.0	basic leucine zipper 23-like
Refseq	XP_027768088.1	0.0	basic leucine zipper 23-like
Refseq	XP_027768089.1	0.0	basic leucine zipper 23-like
Swissprot	Q8GTS2	3e-89	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A3Q7IIJ6	0.0	A0A3Q7IIJ6_SOLLC; Uncharacterized protein
STRING	Solyc10g055550.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-91	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]