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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g023850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 158aa MW: 18008 Da PI: 6.8086 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.8e-11 | 28 | 87 | 3 | 61 |
XXCH.HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkr.errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +l+r +++++NRe+ArrsR RK++ ++ L +L +eN + +++ ++++ + ++ Sopen10g023850.1 28 DLQRkRKKMISNRESARRSRMRKQKHLDDLMSQLSNLMKENNEILTNMSVTTQNYLNIEA 87 4554056788*******************************9888777776666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-14 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.473 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.0E-8 | 30 | 72 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-9 | 31 | 103 | No hit | No description |
SuperFamily | SSF57959 | 2.41E-11 | 31 | 83 | No hit | No description |
CDD | cd14702 | 1.97E-15 | 32 | 82 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MASSSGTSSG SGSGSGSYIL LNSGSEEDLQ RKRKKMISNR ESARRSRMRK QKHLDDLMSQ 60 LSNLMKENNE ILTNMSVTTQ NYLNIEAENS ILRAQVSELR QRFESLTKIT SVSSYNGNIN 120 EISNDQIFHE SYLADAFTQN ESWNFMYHPI MTADIMQY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 34 | RKRKK |
2 | 30 | 51 | RKRKKMISNRESARRSRMRKQK |
3 | 43 | 50 | RRSRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019225641.1 | 4e-57 | PREDICTED: bZIP transcription factor 11-like | ||||
TrEMBL | A0A3Q7II01 | 5e-87 | A0A3Q7II01_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g054010.1.1 | 9e-88 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA537 | 24 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 5e-36 | basic leucine-zipper 44 |