PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g022760.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 853aa    MW: 94851.6 Da    PI: 9.7714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g022760.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM545.5e-17101263128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                        G+rF+P de+l+ +yL k v +k+  + + i+  ++y + + w+L    + +++  yfF+k +k+    +r +r  +  g Wk + k k+v 
  Sopen10g022760.1  10 LGVRFRPIDEQLI-RYLIKFVVSKNYVC-KDIEFEELYGSkKAWELL---EDSSDTKYFFTKLKKRD---TRFSRtLVGGGSWKGKSKGKPVG 94 
                       69***********.99****99999888.55888888876478***6...3455678****998865...68888667899***********8 PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +   ++ g+k+t  + ++++++ +  +W+m+ey+l
  Sopen10g022760.1  95 A---NKAGTKRTYNYEENKKNEVNDVSWIMKEYSL 126
                       8...679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-155153IPR003441NAC domain
PROSITE profilePS5100523.5038153IPR003441NAC domain
PfamPF023651.8E-1211126IPR003441NAC domain
PfamPF142231.3E-32379517No hitNo description
SuperFamilySSF577566.49E-7539574IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.109.3E-5553573IPR001878Zinc finger, CCHC-type
PfamPF000981.8E-4557573IPR001878Zinc finger, CCHC-type
SMARTSM003430.0017557573IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.927558573IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MAIESPDAEL GVRFRPIDEQ LIRYLIKFVV SKNYVCKDIE FEELYGSKKA WELLEDSSDT  60
KYFFTKLKKR DTRFSRTLVG GGSWKGKSKG KPVGANKAGT KRTYNYEENK KNEVNDVSWI  120
MKEYSLDDKV IKLLSNRGVM KHKDVVLCYV RCKVKKSRNH MPTTTVSGND DDEDGDDTLL  180
PQGPNEFGYG DQFPQQIVKP MHYIESGYVG CDDENMNDMT TQPQWPMDDH QLSQLIVTFP  240
MVQGNGAAMN EGNMNGEFVF PEKLSTYQEE QVQNVEETAG RSSRRYRVGN LKQQPARRTA  300
QGANSRRPCA VRRAVPVAAA SRSLRSSRER PDQDGKFRIE KFDGTDFSWW KMQIEDLLVQ  360
KDLDVVLGDK QGKLSDAEWA VLDRKAMSVI RLSLTKNVAF NILKEKTAKG ILEALSNMYE  420
KPSAANKIFL IRELVNTKMK EGSSVTEHIN SLNSILARLL SVGIKFDDEV QALLLLSSLP  480
DSWSGTVTAV ASSVGPNGFT FEKIRDLVLG EDVRRRSSGE SSGDMLNVVR GRGNNRGSGS  540
RNRRRSQSKA RDGSGVTCWN CKEVGHFRNQ CQKDKQVNIA EDSVNEDLFI CCAESNVDSW  600
VMDSGASFHA THSSEALQNL VIGDFGKVRL ADDRALDVTG MGDMVLKTPV GFWTLKDVRV  660
VPSLTKSLIS VRQLDEQGHH VKFGNGQWKV VRGNLVMARG TKRGSLYIVG LPSEGVTVPV  720
QKKNKVRFTE SRGQKKVVFA RKKPRATGQI QDERARKGSG RPVRGVCGSG STGRASAKAP  780
RRQWVKRTSI PAVDTSPENF LLSMESVCSQ GVLGSGSSCL KWEPVGTEDE SRAVSAVTDV  840
LKLRGASTGL SVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A484NHL50.0A0A484NHL5_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1421348