PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g018050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 323aa MW: 34311.9 Da PI: 6.0025 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.3 | 3.2e-16 | 238 | 273 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt++ Tp++Rrgp g+++LCnaCGl ++ kg Sopen10g018050.1 238 CRHCGTSSksTPMMRRGPAGPRSLCNACGLTWANKG 273 ********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 13.127 | 102 | 137 | IPR010399 | Tify domain |
SMART | SM00979 | 2.6E-10 | 102 | 137 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.9E-11 | 106 | 136 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.245 | 169 | 211 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.4E-16 | 169 | 211 | IPR010402 | CCT domain |
SMART | SM00401 | 5.6E-9 | 232 | 285 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.906 | 232 | 280 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-12 | 233 | 288 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.3E-15 | 237 | 279 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 238 | 265 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.16E-14 | 238 | 280 | No hit | No description |
Pfam | PF00320 | 2.1E-14 | 238 | 273 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MTGIRDTMYR RETMTAAVQR EGQQQTHFAD DGDDDDVDVA GGGGGGGMES IEDSSHHIGY 60 DHNHHGLHNG TDGTIATTAA ALNGVEGVPH NSLYVPGSEM VGGGSSDQLT LSFRGEVFVY 120 DAVSPEKVQA VLLLLGGYEV PAGIPTVNMA SQSHRASSEG PGRLNQPQRA ASLSRFREKR 180 KERCFDKKIR YTVRKEVALR MQRKKGQFTS SKTVSDEAAS SSAEGNAGSS QEEQETLCRH 240 CGTSSKSTPM MRRGPAGPRS LCNACGLTWA NKGILRDLSK VSTTGAQELS VKSSEQNGEA 300 DGSDVMAAAG IITSDDENMV LSV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261227 | 0.0 | GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088797.1 | 0.0 | GATA transcription factor 24-like | ||||
Swissprot | Q8H1G0 | 4e-80 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A3Q7IG23 | 0.0 | A0A3Q7IG23_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g047640.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 4e-77 | ZIM-like 1 |