PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g017020.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 180aa    MW: 20981.2 Da    PI: 6.2758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g017020.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.51.2e-31511411127
               NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
                       deel+v++L++k++  +++  +vi+++++++++PwdL+ k+ ++ ++wyf+s+r +      +++r+t++gyWk++g d+++ls+++++ g+k
  Sopen10g017020.1   5 DEELIVHFLHRKISLLPFHP-DVIPDLHLHSYDPWDLDGKAMSGGNKWYFYSRRTH------ETTRITSNGYWKSSGVDETILSTSNHNLGMK 90 
                       9****************999.99**************977778899******9977......5789*************************** PP

               NAM 104 ktLvfykgrapkgektdWvmheyr 127
                       k  +fy gr p+g+kt+W+m+ey+
  Sopen10g017020.1  91 KYYTFYMGRPPQGHKTNWLMQEYS 114
                       ***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.4211148IPR003441NAC domain
SuperFamilySSF1019414.97E-394147IPR003441NAC domain
PfamPF023657.0E-165114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSSPDEELIV HFLHRKISLL PFHPDVIPDL HLHSYDPWDL DGKAMSGGNK WYFYSRRTHE  60
TTRITSNGYW KSSGVDETIL STSNHNLGMK KYYTFYMGRP PQGHKTNWLM QEYSHISHSS  120
PSSSSSRRRR SQSKIDYSKW VICRVYESNS CDSDENELSC LDEVFLSLDD LDDDEISLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-33515030170NAC domain-containing protein 19
3swm_B5e-33515030170NAC domain-containing protein 19
3swm_C5e-33515030170NAC domain-containing protein 19
3swm_D5e-33515030170NAC domain-containing protein 19
3swp_A5e-33515030170NAC domain-containing protein 19
3swp_B5e-33515030170NAC domain-containing protein 19
3swp_C5e-33515030170NAC domain-containing protein 19
3swp_D5e-33515030170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-157HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055302.11e-127NAC domain-containing protein 104-like
SwissprotQ8GWK63e-63NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3Q7IER46e-99A0A3Q7IER4_SOLLC; Uncharacterized protein
STRINGSolyc10g047060.1.11e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-53xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]