PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g005050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 392aa    MW: 44872.9 Da    PI: 6.2743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g005050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.9e-13218260754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       e+Er+RR+++Ns+f  Lre++P+      +K++Ka+ L  Av YI +L
  Sopen10g005050.1 218 EAERQRREKLNSRFYALREVVPNV-----TKMDKATLLSDAVTYITQL 260
                       79*********************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-81557IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142153.4E-2762154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.866211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17217282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10218260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-13218264No hitNo description
Gene3DG3DSA:4.10.280.108.4E-16218272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDEPIFSPSS SQSSLQHRLQ YIVKNQTNYC SDWAYIIFWQ SSNNRSCLTW GDGHLNMKIT  60
NNKDVEWFYV MSLAQSFCVG EGVVGKCFSS GSLVWLAGDQ QFEFCHCERA KEAHYVHGIN  120
TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSMFFGYETI GQFDDLGLFN CLELYGEEAK  180
KGEVVVGTTP HENKVGVKNK TSKKRRREIC ETQGNLVEAE RQRREKLNSR FYALREVVPN  240
VTKMDKATLL SDAVTYITQL KAKVDELESK LHSNNYHYYY PEMKIKHKME NHDINVVDNQ  300
SSITTSRDHT MEIEVKMVGQ DAMIRVQSEN VNYPSTRLMC ALQEVELHVY HANISSVNDF  360
MLHDIVVKVP QGLETEDEVK NALLRSLDQI TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-2081542192Transcription factor MYC3
4rqw_B5e-2081542192Transcription factor MYC3
4rs9_A5e-2081542192Transcription factor MYC3
4yz6_A5e-2081542192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089585.10.0transcription factor MYC2-like
TrEMBLA0A3Q7ICX20.0A0A3Q7ICX2_SOLLC; Uncharacterized protein
STRINGSolyc10g009270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-73bHLH family protein