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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen10g001530.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 242aa MW: 27872.2 Da PI: 8.3753 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen10g001530.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.4 | 5.8e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed++l+ ++++G g+W++ ++ g+ R++k+c++rw +yl
Sopen10g001530.1 16 KGPWTPSEDLKLISFIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYL 63
79******************************99************97 PP
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2 | Myb_DNA-binding | 53 | 7.8e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E++ ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
Sopen10g001530.1 69 RGNFTPQEEDTIINLHRAFGNR-WSKIASHLP-GRTDNEIKNVWNTHL 114
89********************.*********.************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009809 | Biological Process | lignin biosynthetic process |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MGKGRTACCD KSKVKKGPWT PSEDLKLISF IQKHGHGNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPQEEDTI INLHRAFGNR WSKIASHLPG RTDNEIKNVW NTHLKKRLVV 120 MKKEECKSSS SSTSTSSHQG QYMDNNNNNS TTLESLSPTS SKANDQVMDF WEYMLDTSST 180 PTSINNLDHL DSYSKLDITS EHHPQQLVDE YECQKWLTYL EIELGLTTNN QQEDHQNNFM 240 QL
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Publications
? help Back to Top |
- Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana. J. Plant Physiol., 2015. 175: p. 86-94 [PMID:25506770] - Noda S, et al.
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63. Planta, 2015. 242(3): p. 589-600 [PMID:26070439] - Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation. J. Plant Res., 2018. 131(2): p. 297-305 [PMID:28921082]
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