PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g001230.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 345aa    MW: 39806.3 Da    PI: 6.4395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g001230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+l + ++  G g+W+++++  g+ R++k+c++rw +yl
  Sopen10g001230.1 13 RGLWSPEEDEKLMRHITTQGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60
                      788*******************************************97 PP
2Myb_DNA-binding51.32.7e-1666109146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T++E+  ++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Sopen10g001230.1  66 RGSFTEQEERTIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                       89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-25463IPR009057Homeodomain-like
PROSITE profilePS5129415.794860IPR017930Myb domain
SuperFamilySSF466894.4E-2810107IPR009057Homeodomain-like
SMARTSM007171.1E-101262IPR001005SANT/Myb domain
PfamPF002492.0E-131360IPR001005SANT/Myb domain
CDDcd001677.51E-91660No hitNo description
PROSITE profilePS5129425.21761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2564116IPR009057Homeodomain-like
SMARTSM007173.7E-1565113IPR001005SANT/Myb domain
PfamPF002495.9E-1566109IPR001005SANT/Myb domain
CDDcd001676.32E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLMRHITT QGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EQEERTIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLKN KSNNSTKKSN NYTYHIQDST SIFTIDHSST NKEITSMDLK STFFPYCDNI  180
TYNHTPIVPN IEYQNPTFAW SEQINHNNTV TTTLQSQTSA QRTRDSLLDF TSCCLMENAA  240
NINVSSYINE NSMWNGTGLE PTTLNPINGQ EEQEMQVVQL QGDQEFPIIQ TKFCDDQEDV  300
YKVVHDHDQT VEKTFNDSSN FDFEFMNSGL YTNVNSSMDQ LSWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056084.10.0transcription factor MYB46-like
TrEMBLA0A3Q7J5530.0A0A3Q7J553_SOLLC; Uncharacterized protein
STRINGSolyc10g005240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-79myb domain protein 67