PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g036050.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 373aa    MW: 39895.1 Da    PI: 8.3856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g036050.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-09289351655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri  ++ +L++l+P+ +                s+  s a++L +Av++I+ Lq
  Sopen09g036050.2 289 SIAERERRTRISGKLKKLQDLVPNmDKqtsytpilttisCLFSQQTSYADMLDLAVQHIRTLQ 351
                       689*********************888************899999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.51283350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-12286366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-10287355No hitNo description
Gene3DG3DSA:4.10.280.106.1E-12288365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6289351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9289356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MYPSSTSSSS QGSMSHTSTT AGGAGGGLTR YGSAPGSFLT TAVEAVVNGN HEFASHGSHH  60
SHLGPSRFFQ SNLASTSLNS ESTSKAKEQS NLQRSIGFND LTIGGGGGVL PTTSTTPLVR  120
HSSSPARFLN QLATAAGDTG FSVSMGRGSY NPKGGGDSGR GITRLNSQLS FTRQEALSQI  180
AEENEDIEGT SIANGHRKST HSYASASSFA MGSWEDNNSI MFSVTPSKRS KQISNDIVNG  240
LDDGETQFQF GLSQTALEIA SMDRLLHIPE DSVPCKIRAK RGCATHPRSI AERERRTRIS  300
GKLKKLQDLV PNMDKQTSYT PILTTISCLF SQQTSYADML DLAVQHIRTL QDQVQNLNTE  360
LENCKCGCRK SSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087286.10.0transcription factor bHLH128-like isoform X1
TrEMBLA0A3Q7IA680.0A0A3Q7IA68_SOLLC; Uncharacterized protein
STRINGSolyc09g098110.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-73bHLH family protein