PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g034220.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 278aa    MW: 30549.5 Da    PI: 8.1119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g034220.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.4e-20195229135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Sopen09g034220.1 195 CQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRL 229
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.136189225IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-16189243IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-15191252No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14192227IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.32E-14194242No hitNo description
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
PfamPF003202.3E-17195229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKMEDLDPTA CFMVDDDLLN FSLEDETVEE DDEKSTITSK DPLSYSSSSS TNPLVSLLPH  60
PECVEEELEW LSNKDAFPAI EFGILSENPG MVFDHHSPVS VLENSSSTSH SSGNGVVSGN  120
AYTSCCVNLK VPVNYPVRAR SKRRRRRRRG GFAGMPSEHC LPVTQQSFKS IKQREPLLSL  180
PMNSAKSAAS IGRRCQHCGA DKTPQWRAGP LGPKTLCNAC GVRYKSGRLL PEYRPANSPT  240
FSAAAHSNSH RKVLEMRKHK IGVGGMLIHE ACGYRVGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139148RSKRRRRRRR
2141146KRRRRR
3142148RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088717.10.0GATA transcription factor 1-like
SwissprotQ8LAU94e-44GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A3Q7I8440.0A0A3Q7I844_SOLLC; Uncharacterized protein
STRINGSolyc09g091250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-41GATA transcription factor 1