PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen09g030440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 757aa MW: 86609.8 Da PI: 7.0089 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.2 | 8.7e-21 | 59 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel Sopen09g030440.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAFMRIVKRAdhnVPEWRITGFSNVHNHEL 151 6***************999887455667********************9*******************99888555568*************9 PP FAR1 90 a 90 Sopen09g030440.1 152 L 152 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.1E-18 | 59 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.0E-21 | 275 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.225 | 551 | 587 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.3E-8 | 559 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.5E-6 | 562 | 589 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 757 aa Download sequence Send to blast |
MPEITNIAKE TSENGTDSSQ DNTGTVEEMP EDTILQQQTS VNLIPFIGQK FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSDDGKL QRNRKSSRCG 120 CQAFMRIVKR ADHNVPEWRI TGFSNVHNHE LLKSTVMQLI PAYCTMSPDD KSRICMFVKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEVDVR NFLQSFRNVD QDNDPIDLIK MCKEMKDKDL 240 KFKYDYKIDC NNRLEHIAWS YASSMRLYED FGDAIVFDTT HRLDVYDMLL GIWIGVDNHG 300 SHCFFGCILL RDENMRSFSW ALKTFLGFMN GKTPGTILTD QNLWLKEAIA TQMPRVKHAF 360 CIWNITSRFS EWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMIET YRLDGNKHIA 420 SLYALRSYWA LPFLRSFFFA GMTSTFQSET INTFIQRFLS AQSVLGNFVE QVVRVVDAKD 480 QAGAKHKVQR IVQKVPLKTG SPIESHAANV LTTYAFSKLQ EELVFAPQYA SLMVDESYFV 540 VRHHKEMGGG YKVLWVPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDRYLPMRW 600 REFTSSLAKP TLLSLPSDHL GKVQLLQSMI STLINESVET EERLNVVCDE VSTVLSRMKG 660 LPTAANSGNA IAYESPSDSL ILAEVEDSEG IGQSFTCSPH ECINLAKLKE RGSRDGLDFY 720 GKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088413.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_015088414.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_027775510.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_027775511.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A3Q7I771 | 0.0 | A0A3Q7I771_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g075640.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13535 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|