PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g029630.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 522aa MW: 57853.4 Da PI: 8.8221

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g029630.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopen09g029630.1 76 FVCEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	15.6	4.8e-05	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Sopen09g029630.1 152 WKCDKCSKKYAVQSDWKAHQKTC 174 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	75	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.34E-8	75	98	No hit	No description
PROSITE profile	PS50157	10.949	76	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	76	98	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.4E-5	76	98	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	117	147	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-5	140	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.34E-8	147	173	No hit	No description
SMART	SM00355	94	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MSNISGEEGS FSSGEEAHLH TSNNNISSIT TSNGSTSQSQ QQQPLAKKKR NLPGNPDPNA 60 EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKRVYICP 120 EPTCVHHNPS LALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK 180 CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNNNME HNMHSGQMHE IMSSNASLSL 240 SEFNNFDPKN SLKSLPQELL PIPFKSMTNN MAPGGMFSTT SGNLFGNSPR SVASSSSGLQ 300 LSSNIPSNFN YLQDNGKNGV AQGQGQMSSV PMSATALLQK AAQMGATASS SINSPMMQKS 360 FVTSAMAGSD ITITRPLPNY DNFQMQQDSN NHQNQSQNQN QNQNLAVVMN DMGIYSGILM 420 SNDQNNDGGY IKNVTEVLDR DNHSTNDRVR NQTMMVQNGS NDMLTVDFLG IGGASRAPIS 480 NLQEQRRFEA AINQQRLQAT SSFHHQQNIN HNSGLEKPIW DV

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MSNISGEEGS FSSGEEAHLH TSNNNISSIT TSNGSTSQSQ QQQPLAKKKR NLPGNPDPNA  60
EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKRVYICP  120
EPTCVHHNPS LALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK  180
CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNNNME HNMHSGQMHE IMSSNASLSL  240
SEFNNFDPKN SLKSLPQELL PIPFKSMTNN MAPGGMFSTT SGNLFGNSPR SVASSSSGLQ  300
LSSNIPSNFN YLQDNGKNGV AQGQGQMSSV PMSATALLQK AAQMGATASS SINSPMMQKS  360
FVTSAMAGSD ITITRPLPNY DNFQMQQDSN NHQNQSQNQN QNQNLAVVMN DMGIYSGILM  420
SNDQNNDGGY IKNVTEVLDR DNHSTNDRVR NQTMMVQNGS NDMLTVDFLG IGGASRAPIS  480
NLQEQRRFEA AINQQRLQAT SSFHHQQNIN HNSGLEKPIW DV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	148	218	3	72	Zinc finger protein JACKDAW
5b3h_F	5e-35	148	218	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015087384.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9SCQ6	1e-111	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3Q7I6R1	0.0	A0A3Q7I6R1_SOLLC; Uncharacterized protein
STRING	Solyc09g074780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-101	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]