PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g029570.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 999aa MW: 111092 Da PI: 7.8671

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g029570.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.7e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +R++ +k Sopen09g029570.1 65 KRPRDLLNPKAIKYMQSIFSIKDAINKKETREISALFGVTVTQVRDFFAAQRTRVRK 121 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.167	62	122	IPR001356	Homeobox domain
SMART	SM00389	0.0055	64	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-6	64	123	IPR009057	Homeodomain-like
CDD	cd00086	7.86E-4	65	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-4	65	122	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MENQLQLALT SPTTPFSSLF ESQKEILNSQ IYQLQNIVVQ QCNLTGVNPL SQEMAAGALS 60 IKIGKRPRDL LNPKAIKYMQ SIFSIKDAIN KKETREISAL FGVTVTQVRD FFAAQRTRVR 120 KFLRFSREKP ITTNLSIEGP IPLSSDPSSQ TEPVPLDSAV PISTEEGPSC LTQDEVLTAM 180 DEKDRHFVDN ILTLMCKEET FSGRVKLMDW ILEVQNPSVL YWFLTKGGVM ILSAWLSEAA 240 GEEQTSVLHL ILKVLCHLPL HKAFPGHMSA ILQSVNSLRF YRTPDISNRA RILLARWSKI 300 FAKSQALKKR NGIKSASDMH DELLLQQSIS EVVGDEIWNS KIEDEEGHAN LCGTSENSRK 360 LDSPQPVKLL MASSDDSNKR LKGALVTKTR ERRKVQLMEQ PSQRTTGRSL GRPAPATQGR 420 PLSADDIQKA KMRAQFMQSK YGKTNNDDSS RVKPQAPNGI TSSPNGNLLG VPKFQDRPKV 480 EECEKKLNSV ASKEPNQLEN HLKLSFDVEE PPPKRCKKMQ IPWRKPPEIQ PSDAWKVCAG 540 GESKEVDVQN KRIRREREII YRTVQEIPLN PKEPWDREMD PDDTLTTELP LEQLPDAEGE 600 TGVLPQEDRE TEAAALASTS NGIATTAEPD VELLAILLKH PELVYALTSG QGGNLSSEQI 660 VKLLDSIKAD GRNSLSIQTN LARDAEKNVE VSLPSPTPSS DPGTSGLSMQ NFAKNPFSQR 720 SSMVVPEANG VHQHAALVQS QEMLQASSLV HQQVTLAPQL AQQLALLQAA AGSYGNDHRP 780 SPLNPSINQT VLTNPMHSQF SAASEPAVNR NNYSPFGLTE YNQQSATAAA AVRIQGETYG 840 NIRSSQMPIA NVQQRTISLH ASQMTPQRPQ LQTQAQPGYA PEHMWGTIPG SALNRGYQEN 900 AIPNHYNPHV TGHVEPGLQQ ATWRGNNNYA EGAGFESWSP DDSPVRRQEQ VARWNYTQPQ 960 MNMRDSYRPD WSASRNPGHY SGYRGPDDGG NRRWGDRRR

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MENQLQLALT SPTTPFSSLF ESQKEILNSQ IYQLQNIVVQ QCNLTGVNPL SQEMAAGALS  60
IKIGKRPRDL LNPKAIKYMQ SIFSIKDAIN KKETREISAL FGVTVTQVRD FFAAQRTRVR  120
KFLRFSREKP ITTNLSIEGP IPLSSDPSSQ TEPVPLDSAV PISTEEGPSC LTQDEVLTAM  180
DEKDRHFVDN ILTLMCKEET FSGRVKLMDW ILEVQNPSVL YWFLTKGGVM ILSAWLSEAA  240
GEEQTSVLHL ILKVLCHLPL HKAFPGHMSA ILQSVNSLRF YRTPDISNRA RILLARWSKI  300
FAKSQALKKR NGIKSASDMH DELLLQQSIS EVVGDEIWNS KIEDEEGHAN LCGTSENSRK  360
LDSPQPVKLL MASSDDSNKR LKGALVTKTR ERRKVQLMEQ PSQRTTGRSL GRPAPATQGR  420
PLSADDIQKA KMRAQFMQSK YGKTNNDDSS RVKPQAPNGI TSSPNGNLLG VPKFQDRPKV  480
EECEKKLNSV ASKEPNQLEN HLKLSFDVEE PPPKRCKKMQ IPWRKPPEIQ PSDAWKVCAG  540
GESKEVDVQN KRIRREREII YRTVQEIPLN PKEPWDREMD PDDTLTTELP LEQLPDAEGE  600
TGVLPQEDRE TEAAALASTS NGIATTAEPD VELLAILLKH PELVYALTSG QGGNLSSEQI  660
VKLLDSIKAD GRNSLSIQTN LARDAEKNVE VSLPSPTPSS DPGTSGLSMQ NFAKNPFSQR  720
SSMVVPEANG VHQHAALVQS QEMLQASSLV HQQVTLAPQL AQQLALLQAA AGSYGNDHRP  780
SPLNPSINQT VLTNPMHSQF SAASEPAVNR NNYSPFGLTE YNQQSATAAA AVRIQGETYG  840
NIRSSQMPIA NVQQRTISLH ASQMTPQRPQ LQTQAQPGYA PEHMWGTIPG SALNRGYQEN  900
AIPNHYNPHV TGHVEPGLQQ ATWRGNNNYA EGAGFESWSP DDSPVRRQEQ VARWNYTQPQ  960
MNMRDSYRPD WSASRNPGHY SGYRGPDDGG NRRWGDRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088490.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-154	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A3Q7I761	0.0	A0A3Q7I761_SOLLC; Uncharacterized protein
STRING	XP_009604664.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-156	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]