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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g027820.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 716aa MW: 81777.6 Da PI: 6.2156 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.8 | 3.4e-17 | 26 | 77 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le++F+k+++p++++ ++L ++ gL+ +qVk+WFqN+R++ k Sopen09g027820.3 26 QRHSMEQIQRLEAFFKKCPHPDEDQQKQLGREAGLDHKQVKFWFQNKRTQTK 77 67899********************************************988 PP | |||||||
2 | START | 112.2 | 7.6e-36 | 237 | 457 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 a + ++e vk+ + ++p+Wv ss ++++ +kf+ +v ++e ++++g+v m++ +l +ld +W + ++ +a+ Sopen09g027820.3 237 AVASMNEMVKLWEMNDPFWVDSSsdrrCFIHREIYGRKFSN-QVlpyqtsmGRIESSKDFGIVSMTAIELIHNFLDPV-KWMNLFPtivtAAK 327 67899******************766533456667777744.55688889999************************9.99999999999*** PP EEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE.-EESSEEEEEEEECTCEEEEEEEE CS START 81 tlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR.aellpSgiliepksnghskvtwve 168 t+ev++sg g +qlm+ +l lsplv R+f+f+R++rql a +w+ vd+S d ++ +s+v + + ++pSg++i++++ng skvtwve Sopen09g027820.3 328 TIEVLDSGtwgGSIQLMYEKLHILSPLVEaREFLFIRCCRQLDATTWIMVDISYDIFNEI--QSGVPCySWKFPSGCVIQDMGNGQSKVTWVE 418 ****************************99*********************888876664..4555442469********************* PP -EE-.-SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdl.kgrlphwllrslvksglaegaktwvatlqrqcek 206 hv + +++++ +++r l+ + a gak+w tlqr ce+ Sopen09g027820.3 419 HVQVyEKYQVNSIFRDLLCDREAYGAKRWIVTLQRMCER 457 **97256778***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 7 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-16 | 9 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.013 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-13 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.52E-13 | 26 | 80 | No hit | No description |
Pfam | PF00046 | 9.4E-15 | 26 | 77 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 32.935 | 226 | 460 | IPR002913 | START domain |
CDD | cd08875 | 7.22E-77 | 230 | 456 | No hit | No description |
SuperFamily | SSF55961 | 8.79E-22 | 233 | 458 | No hit | No description |
SMART | SM00234 | 4.7E-25 | 235 | 457 | IPR002913 | START domain |
Pfam | PF01852 | 2.7E-29 | 237 | 457 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.9E-5 | 296 | 421 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.65E-7 | 479 | 685 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MTGSGEEPAG EPSNSQNRSE RHGQYQRHSM EQIQRLEAFF KKCPHPDEDQ QKQLGREAGL 60 DHKQVKFWFQ NKRTQTKTQN ERSINNALRK EKERFLCENK AMKEAMKNIM CPKCDGLPIG 120 KEERERNLEN MKTENQWLTQ QYEKVSNLIS HVVGRPFVMD SNLAPQKSTL RSTSNSSDGT 180 LLNQEICGSL IRYPPLRQEN NHNNNNVHTH SIMSPSPQEH DEYHHDSRQQ KILFETAVAS 240 MNEMVKLWEM NDPFWVDSSS DRRCFIHREI YGRKFSNQVL PYQTSMGRIE SSKDFGIVSM 300 TAIELIHNFL DPVKWMNLFP TIVTAAKTIE VLDSGTWGGS IQLMYEKLHI LSPLVEAREF 360 LFIRCCRQLD ATTWIMVDIS YDIFNEIQSG VPCYSWKFPS GCVIQDMGNG QSKVTWVEHV 420 QVYEKYQVNS IFRDLLCDRE AYGAKRWIVT LQRMCERCNF SMGSTYPTRH DFKGVFHDPE 480 GVKNTIQVSQ RMVKSFFEIL SMTDYDGDFP TSSQVNRVDR ISVRESEEII EPKGFIAIAT 540 ASLWLPLSFQ DVFNFFKDDK TRNQWDVLTG ENNVFELDRV PTGTFSGNNI TIIQPYNMHK 600 EMLVLEETSI DEMGAFLVYA PIEIRAITSI VNGVDATKVP ILPSGIIISP DGRLSSNSDG 660 TANAQNGSIL TVAFQILICG DNPTSKQQQF DVVASVHGVL GATILKIKEA LGCSDL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087432.1 | 0.0 | homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | A0A3Q7I5T0 | 0.0 | A0A3Q7I5T0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g066030.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1021 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 1e-155 | homeodomain GLABROUS 8 |