PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g021180.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 471aa    MW: 51719.8 Da    PI: 7.576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g021180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09295342455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen09g021180.1 295 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 342
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-10289346No hitNo description
SuperFamilySSF474598.24E-17289358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16291357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6295342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEKDYFINGG IPNPALQFEP TMSFPSWNPL HSGQSLFNPN WDHSTPQFDS TLNAIVSSSP  60
AELIGKLGTV CSSPQAVLHN NSYNRPMMGK DNIPNLGSSL PPPLPADPGF AQRAAKFSCF  120
GSRSFNGRTS PLGLNNTELS HRSAQTLGNG KLPRVSSSPS LKQGGSPLQI KNSGQTRMEM  180
NSNESVSEPS GETGSKLPTE LNSSPRKRKA VSRGKTKEDS PTEGANGNRG SEADDNARAK  240
RCKQVESNGI ENGRVHMEES KDDETQKQVM EHQKPTEPPK DYIHVRARRG QATDSHSLAE  300
RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM KLATVNPNLD  360
FPLSKDICQP NGSVAHPVFP IDKTSSSYQQ GRSDIPNGAL SQCSVDTLDN SLCRSLGMQL  420
PPLDGFAEYL NQFPEDDLQS FVQMGFTQNP NKDMTLQSQG PHQTSHMKIE M
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086507.10.0transcription factor bHLH62-like isoform X1
TrEMBLA0A3Q7I2610.0A0A3Q7I261_SOLLC; Uncharacterized protein
STRINGSolyc09g057710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-89bHLH family protein