PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g020840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 93aa    MW: 9955.11 Da    PI: 6.4961
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g020840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-0767821126
                      GTS--TTTTT-SS-SS CS
           zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                      + G+Ck G++C+F Hg
  Sopen09g020840.1 67 QPGYCKNGSSCRFLHG 82
                      77*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006425.9E-56682IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-46682IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MESSEKHTKT TIEPPLMAAA LVGEQPGSLL LHQQHQGDGA TSCLALWVKL QQHQLYAVSS  60
DSEHRQQPGY CKNGSSCRFL HGGGPCEGEV GSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-112HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7I2H74e-54A0A3Q7I2H7_SOLLC; Uncharacterized protein
STRINGSolyc08g062540.1.16e-54(Solanum lycopersicum)