PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g010770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 315aa    MW: 34885.4 Da    PI: 8.3774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g010770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-091071481055
                       HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       r+R  +i   f++Lr l+P+ +      K +K++i+ekA ++I++Lq
  Sopen09g010770.1 107 RQRTMKIGILFNTLRALIPNiP-----AKADKSTIVEKALNHIQKLQ 148
                       99******************88.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.69397147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-12100160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-7102151No hitNo description
Gene3DG3DSA:4.10.280.101.2E-10102160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-4103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6107148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00597237279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNGGGENNHV FPWETNDGWP YLNLNGNHIG SGVTFEGDKL QDPTRFDTYQ PLTVVNEVIE  60
ASTNAGKKRS PPNRKKNGKE IVEPNFGVDG AGDRGGLNHD LHIWTARQRT MKIGILFNTL  120
RALIPNIPAK ADKSTIVEKA LNHIQKLQNT LGKLEQEKLQ RLQEHNVRCM SSQKLTNACN  180
NWEKYLGDQG STHNSSSTTS TTHGTNPLMV NNNIPTGFVT WSSPNVILNV CGENAHISVC  240
CPKKSGLFTF ICYILGKHEI EIVSAQISSD QFRSMFMIQS HAKGGTGIAQ YSEASRVEEM  300
YKQVAIEIMS FATPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326110.10.0transcription factor bHLH95-like
TrEMBLK4CS820.0K4CS82_SOLLC; Uncharacterized protein
STRINGSolyc09g018150.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-34bHLH family protein