PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g003930.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRF

Protein Properties

Length: 375aa MW: 41606.5 Da PI: 9.0353

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g003930.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.9	2.3e-25	148	191	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Sopen09g003930.1 148 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVE 191 79***************************************987 PP
2	QLQ	50.9	4.7e-18	79	113	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+ aQ+q+L+ Q+l+yK+++a++PvP+eLl i+ Sopen09g003930.1 79 YFSLAQWQELELQALIYKHMLAGAPVPHELLYLIK 113 7*****************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	8.5E-10	78	114	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.6E-13	79	112	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.684	79	114	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.911	148	192	IPR014977	WRC domain
Pfam	PF08879	3.0E-21	149	191	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDFKLKQWRN ESSEEEKSTK LPKLVLDLDS FSSSCYSHSD SDSNSSALPL FVSEPINKLS 60 AFADSSLTPT KLPSMGNGYF SLAQWQELEL QALIYKHMLA GAPVPHELLY LIKKSLINSS 120 PYYNMSQQYH QYQQAMLHSG YWGRTNMDPE PGRCRRTDGK KWRCSRDVVS GHKYCERHVH 180 RGRNRSRKPV EIPTTTTPPT SSRGDGEVLK VNPAMTSHGG VTPQFALSGH ANSVDLLHLN 240 QRPSKSIIEK KGPMEAQNDS KPSGQILRHF FDDWPRQQLE ENENATSMAS ATSLSISMPG 300 NPSSDVSLKL STGDRHNSGT RVHNVERSMW GTNQVASMGG PLAEALRSSM SSSSPTSVLH 360 HLPRGSTSEA SYVTT

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDFKLKQWRN ESSEEEKSTK LPKLVLDLDS FSSSCYSHSD SDSNSSALPL FVSEPINKLS  60
AFADSSLTPT KLPSMGNGYF SLAQWQELEL QALIYKHMLA GAPVPHELLY LIKKSLINSS  120
PYYNMSQQYH QYQQAMLHSG YWGRTNMDPE PGRCRRTDGK KWRCSRDVVS GHKYCERHVH  180
RGRNRSRKPV EIPTTTTPPT SSRGDGEVLK VNPAMTSHGG VTPQFALSGH ANSVDLLHLN  240
QRPSKSIIEK KGPMEAQNDS KPSGQILRHF FDDWPRQQLE ENENATSMAS ATSLSISMPG  300
NPSSDVSLKL STGDRHNSGT RVHNVERSMW GTNQVASMGG PLAEALRSSM SSSSPTSVLH  360
HLPRGSTSEA SYVTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015087701.1	0.0	growth-regulating factor 3-like
Swissprot	Q8L8A7	3e-78	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A3Q7HWU0	0.0	A0A3Q7HWU0_SOLLC; Uncharacterized protein
STRING	Solyc09g009200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3283	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	4e-62	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]