PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g003830.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 1043aa MW: 113229 Da PI: 7.1348

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g003830.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	904	925	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg F+ + L rH+ H Sopen09g003830.1 904 QCGICGFGFKFQVKLDRHLEWH 925 8*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.90	1.4E-42	77	200	IPR008942	ENTH/VHS
PROSITE profile	PS51391	37.904	78	206	IPR006569	CID domain
SuperFamily	SSF48464	1.96E-38	78	199	IPR008942	ENTH/VHS
SMART	SM00582	7.8E-44	81	203	IPR006569	CID domain
CDD	cd03562	1.45E-37	85	193	No hit	No description
Pfam	PF04818	1.5E-8	134	187	IPR006903	RNA polymerase II-binding domain
PROSITE profile	PS50157	9.93	903	930	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	905	925	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence Send to blast
MEMEGSRRPF DRSRLEPGPK KPRLVEAPIG TDRGSNGRSF IPQRGPGNSR IRASDKGGDS 60 ENSDSIRGSF QQQQQQTQHQ ELVSQYKTAL AELTFNSKPI ITNLTIIAGE NLQAAKAIAA 120 TICNNIIEVP TEQKLPSLYL LDSIVKNIGR DYIKYFATRL PEVFSKAYRQ VEPSVHPGMR 180 HLFGTWKGVF PPQQLQLIEK ELGFTTGVNG SSSGTSRPDP QAQRPAHSIH VNPKYLEARQ 240 RLQQSTRAKG AASDISSTVN VNEDAERPER TTSVNSGRSW IDPSIKRAQK EKLNEHVPEK 300 TTSAAYGDSD YASDLPRRAA FGVGRGGERF KEQGFDKPWY DSGAGKILSQ RSSLDTKHDL 360 QSIPQKSATS DAHPQLIPSL PNRTSTLTDR SWKNSEEEEY MWDDVNNAAK DRWASEDSDK 420 SDLENQLRRP QSIREVGLRA DSEASADSPS AEERGPASFG NQMSAMWSRG SHALDGVRHS 480 ASVQGAPVHS EGYQTSFSGL SKVANSVSRA SYKLQTGSVH VGTPNIGPMN ATLESRGSIV 540 QHGETLRAAS PSAQSPMHHR PPSPSLITSN CNQVINSPAE QYQMQTSSRS DPRLSQISRR 600 SNLDPRNQYA QESLTMPSRN TVSVNSQRQH PPSLQNSSAL SSSHQLRQKV QRESLESEYS 660 GQTKNSTVPE ISGFPDPSST SSLLAAVLKS GVIGNKSSSG TTSSSLDKSA LSSQDSAQPH 720 PAQFSTSGPR IPPASVTSLS MDRNASNSPN YSQRNVEQPP LPPGLPPTLA GTASSQMPNA 780 PNTASSPLSS ILSTLVAKGL ISASKKDPPI YTPSDTPPQT QNLIPPASSI STPALSAPIS 840 SSVPSSAHKD ELSHSKPSAK TPEVLLQSMK EEAKSLIGLV FKPDVIRNSH PAVISDLVDD 900 VPLQCGICGF GFKFQVKLDR HLEWHSLRNP DVKLLNNSRK WYLNSGEWIA AFGGLPCGDK 960 SEGPAGGSSE TSECTETMVP ADECQCVCVL CGEFFEDFYN EESDEWMFKD AVYMSIPSES 1020 DCQGPIVHKN CISESSCQEL GFA

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence Send to blast

MEMEGSRRPF DRSRLEPGPK KPRLVEAPIG TDRGSNGRSF IPQRGPGNSR IRASDKGGDS  60
ENSDSIRGSF QQQQQQTQHQ ELVSQYKTAL AELTFNSKPI ITNLTIIAGE NLQAAKAIAA  120
TICNNIIEVP TEQKLPSLYL LDSIVKNIGR DYIKYFATRL PEVFSKAYRQ VEPSVHPGMR  180
HLFGTWKGVF PPQQLQLIEK ELGFTTGVNG SSSGTSRPDP QAQRPAHSIH VNPKYLEARQ  240
RLQQSTRAKG AASDISSTVN VNEDAERPER TTSVNSGRSW IDPSIKRAQK EKLNEHVPEK  300
TTSAAYGDSD YASDLPRRAA FGVGRGGERF KEQGFDKPWY DSGAGKILSQ RSSLDTKHDL  360
QSIPQKSATS DAHPQLIPSL PNRTSTLTDR SWKNSEEEEY MWDDVNNAAK DRWASEDSDK  420
SDLENQLRRP QSIREVGLRA DSEASADSPS AEERGPASFG NQMSAMWSRG SHALDGVRHS  480
ASVQGAPVHS EGYQTSFSGL SKVANSVSRA SYKLQTGSVH VGTPNIGPMN ATLESRGSIV  540
QHGETLRAAS PSAQSPMHHR PPSPSLITSN CNQVINSPAE QYQMQTSSRS DPRLSQISRR  600
SNLDPRNQYA QESLTMPSRN TVSVNSQRQH PPSLQNSSAL SSSHQLRQKV QRESLESEYS  660
GQTKNSTVPE ISGFPDPSST SSLLAAVLKS GVIGNKSSSG TTSSSLDKSA LSSQDSAQPH  720
PAQFSTSGPR IPPASVTSLS MDRNASNSPN YSQRNVEQPP LPPGLPPTLA GTASSQMPNA  780
PNTASSPLSS ILSTLVAKGL ISASKKDPPI YTPSDTPPQT QNLIPPASSI STPALSAPIS  840
SSVPSSAHKD ELSHSKPSAK TPEVLLQSMK EEAKSLIGLV FKPDVIRNSH PAVISDLVDD  900
VPLQCGICGF GFKFQVKLDR HLEWHSLRNP DVKLLNNSRK WYLNSGEWIA AFGGLPCGDK  960
SEGPAGGSSE TSECTETMVP ADECQCVCVL CGEFFEDFYN EESDEWMFKD AVYMSIPSES  1020
DCQGPIVHKN CISESSCQEL GFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	2e-15	82	186	8	112	PCF11 protein
1sz9_B	2e-15	82	186	8	112	PCF11 protein
1sz9_C	2e-15	82	186	8	112	PCF11 protein
1sza_A	2e-15	82	186	8	112	PCF11 protein
1sza_B	2e-15	82	186	8	112	PCF11 protein
1sza_C	2e-15	82	186	8	112	PCF11 protein
2bf0_X	2e-15	82	186	13	117	PCF11
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088129.1	0.0	polyadenylation and cleavage factor homolog 4
TrEMBL	A0A3Q7HZ26	0.0	A0A3Q7HZ26_SOLLC; Uncharacterized protein
STRING	Solyc09g009120.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4944	5	5