PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g003640.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 559aa    MW: 60962.6 Da    PI: 7.4365
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g003640.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.3e-18146232186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+q+e
  Sopen09g003640.2 146 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GLTISHWPWFKQME 232
                       5*************************************767778899************************98.88999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.7E-21144234No hitNo description
Gene3DG3DSA:3.40.1160.108.5E-67307552IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.57E-53313552IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.534313553IPR015963Uridylate kinase, bacteria
PRINTSPR004741.4E-5315329IPR001057Glutamate/acetylglutamate kinase
CDDcd042542.02E-110316553No hitNo description
PfamPF006964.9E-23317532IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004741.4E-5459486IPR001057Glutamate/acetylglutamate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0006561Biological Processproline biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNAAVAV TPTTTTANPN YHHQPFSSVR YKPVQIHPPP ISAGSPKNIS  60
GDEDDGDGYS DNNAQSYHIG VNPYENDSIP FENDTNVNRS RGKSSNEKRA DREDISDNGT  120
PYSYKRSRIS SSSGSGSGEY RKDREEWSDT AIACLLEAYM EKFVQLNRGN LRGRDWEEVA  180
AMVSERCEKQ SKSVEQCKNK VDNLKKRYKL ERHRMSNGGL TISHWPWFKQ MEQIVGNSIS  240
VKATSEEDKA IVPMNNSSTG RQPKSCCLPL IKILNLAIVP MNNSSTGRQP KRYGTAVPSP  300
SGQIVKAKSS MSPRWRRVVL KISGAALAGM TPNTNDANNI DPKVATLLAA EVSIACRLGI  360
EVAIVVGGRN FFCGETWVTS TGLERCTAYQ IGMMATLMNS ILLQSALEKV GVQTRVQSAF  420
NMPELTEPYS RQRAMRHLEK GRVVIFGGIG AGTGNPLFST DTVAALRASE IHADAILKAT  480
NVDGVYVCDS RNNNVVAEHI SFRELVSGGD SPLDLMAVTL CEENAFPVVI FNLHGPGNLS  540
RALCGEQVGT LIDQTGRVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-563155529239Uridylate kinase
3ek5_B1e-563155529239Uridylate kinase
3ek5_C1e-563155529239Uridylate kinase
3ek5_D1e-563155529239Uridylate kinase
3ek5_E1e-563155529239Uridylate kinase
3ek5_F1e-563155529239Uridylate kinase
3ek6_A1e-563155529239Uridylate kinase
3ek6_B1e-563155529239Uridylate kinase
3ek6_C1e-563155529239Uridylate kinase
3ek6_D1e-563155529239Uridylate kinase
3ek6_E1e-563155529239Uridylate kinase
3ek6_F1e-563155529239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086218.10.0uncharacterized protein LOC107029340
TrEMBLA0A3Q7HYY40.0A0A3Q7HYY4_SOLLC; Uncharacterized protein
STRINGSolyc09g008850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein