PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g003620.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 491aa    MW: 56087.2 Da    PI: 6.6397
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g003620.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.6e-24121230186
          trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                       +Wt+++v++Li ++ +++++++++                        +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k
  Sopen09g003620.1 121 KWTDNMVRLLIMVVYYIGDEVGSEGnnnndssgkkkggsgggggvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGK 213
                       7**************999988864335667888999999****************************************************** PP

          trihelix  71 r.tsessstcpyfdqle 86 
                       + +++++++ ++++ ++
  Sopen09g003620.1 214 GtSCRVVENQKLLETMD 230
                       *669********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-21119256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDSGSLYSNM GPGMLGLEMS LHHQIPQQNT HHHLHQQPPP PPHPQPPPHH HPMVSFAHQE  60
NNDNQQQTLR QVFPFGNNKA KNQSLNFSDD DEPVPGVSAD NNSTDDGKRN GNKTCPWQRM  120
KWTDNMVRLL IMVVYYIGDE VGSEGNNNND SSGKKKGGSG GGGGVGVLQK KGKWKSVSRA  180
MMERGFYVSP QQCEDKFNDL NKRYKRVNDI LGKGTSCRVV ENQKLLETMD HLSPKMKEEV  240
KKLLNSKHLF FREMCAYHNS CGHNGGSGSG VANPQAHQNL SEQQQQQQRC LHSSENTNPR  300
IGASLVVGSK MPKGGENDEE NEDEEDEDED EEDDDDEVSG ARGGHEHDHQ SHEEEDDDMD  360
ERSRKRQRKL GTSSPMVQQL STELANVVQD RGRSPLEKMQ WMKTKMMQLE EQHVSYLCQA  420
FELQKQRLKW KKFISKKERE MERDKLINER KKLENERMVL LLKQKELELL DYHQHHPNNN  480
HRNSDPSSVT G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086510.10.0nucleomorphin
TrEMBLA0A0V0IKG10.0A0A0V0IKG1_SOLCH; Putative nucleomorphin-like
STRINGXP_009788508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.18e-58sequence-specific DNA binding transcription factors