PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 754aa MW: 84785.6 Da PI: 8.9681

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g001330.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7e-29	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt+eLH+ F +av+qLGG+e+AtPk il++m++ gLt+ hvkSHLQkYR+ Sopen09g001330.1 23 KERLKWTQELHDLFEKAVSQLGGPERATPKGILKVMGISGLTIFHVKSHLQKYRM 77 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.387	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-26	21	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-15	22	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.9E-23	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	5.8E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	6.0E-16	109	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
SuperFamily	SSF103473	7.72E-32	210	432	IPR020846	Major facilitator superfamily domain
CDD	cd06174	7.35E-13	236	425	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	2.6E-11	239	422	No hit	No description
PROSITE pattern	PS01022	0	278	302	IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
Pfam	PF00854	1.4E-121	289	713	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	7.72E-32	507	745	IPR020846	Major facilitator superfamily domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006857	Biological Process	oligopeptide transport
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding
GO:0005215	Molecular Function	transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MPGEFREQPS SSMASNRSDG SSKERLKWTQ ELHDLFEKAV SQLGGPERAT PKGILKVMGI 60 SGLTIFHVKS HLQKYRMSKF VREDSEIGKF ERRSISEILP NFSVTAGAQL NEALQMHMDA 120 HKRLSDHLEV QRNLKIKLEA QGKFLERIME EEKVCASSSR PNCKSYSYLP LSLPSLCEES 180 ESNVKELERK LEMERADDVY TKDGTTDITK APANKKKTGT WKACFFILGE EISERLAYFG 240 TSANLVNYLH QMLGLNNAAA SKVVTNFQGT CYVSPLLGAF LADAYLGRYW TIAIFSIIYI 300 MGMTLLTMSA SIVGIKPSCH DGICHPTELE KTTFYIAIYL IALGTGGIKP CVSSFGADQF 360 DDNDEVEKIK KSSFFNWFYL SISIGALIAS SVLVWIQTSV GWGWGFGIPA VAMAIALMFF 420 FVGTRFYRLQ TPGGSPLIRM LQVLVASMRK WDVKPPADKS LLYETANEES NIKGSRKLTH 480 TDKFSFLDKS AVETARDKVN GSVNPWRLCT VTQVEEIKSI IRLLPVWACC IMFTTAYSQM 540 NTTFVLQGNT MDRYMGGNFK IPSASLIVFE TISVILWVLT YDQLIIPFAR KYTGHARGFT 600 QLQRIGIGLV ISTLSMVSAG VVEAVRLDYI KQKGYYDVKT IPMSIFWQVP QYFFIGCAGV 660 FTLIGQVEFF YDQAPDAMRS LCSALLLMAA ALGSYLSSFL VTIVTRNKKF GWITENLNKG 720 HLDYFFWLLV ILSIINFIVF LLVSRLYVYK KVIH

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MPGEFREQPS SSMASNRSDG SSKERLKWTQ ELHDLFEKAV SQLGGPERAT PKGILKVMGI  60
SGLTIFHVKS HLQKYRMSKF VREDSEIGKF ERRSISEILP NFSVTAGAQL NEALQMHMDA  120
HKRLSDHLEV QRNLKIKLEA QGKFLERIME EEKVCASSSR PNCKSYSYLP LSLPSLCEES  180
ESNVKELERK LEMERADDVY TKDGTTDITK APANKKKTGT WKACFFILGE EISERLAYFG  240
TSANLVNYLH QMLGLNNAAA SKVVTNFQGT CYVSPLLGAF LADAYLGRYW TIAIFSIIYI  300
MGMTLLTMSA SIVGIKPSCH DGICHPTELE KTTFYIAIYL IALGTGGIKP CVSSFGADQF  360
DDNDEVEKIK KSSFFNWFYL SISIGALIAS SVLVWIQTSV GWGWGFGIPA VAMAIALMFF  420
FVGTRFYRLQ TPGGSPLIRM LQVLVASMRK WDVKPPADKS LLYETANEES NIKGSRKLTH  480
TDKFSFLDKS AVETARDKVN GSVNPWRLCT VTQVEEIKSI IRLLPVWACC IMFTTAYSQM  540
NTTFVLQGNT MDRYMGGNFK IPSASLIVFE TISVILWVLT YDQLIIPFAR KYTGHARGFT  600
QLQRIGIGLV ISTLSMVSAG VVEAVRLDYI KQKGYYDVKT IPMSIFWQVP QYFFIGCAGV  660
FTLIGQVEFF YDQAPDAMRS LCSALLLMAA ALGSYLSSFL VTIVTRNKKF GWITENLNKG  720
HLDYFFWLLV ILSIINFIVF LLVSRLYVYK KVIH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a2n_A	1e-136	191	751	3	570	PROTEIN NRT1/ PTR FAMILY 6.3
5a2n_B	1e-136	191	751	3	570	PROTEIN NRT1/ PTR FAMILY 6.3
5a2o_A	1e-136	191	751	3	570	NITRATE TRANSPORTER 1.1
5a2o_B	1e-136	191	751	3	570	NITRATE TRANSPORTER 1.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. {ECO:0000269\|PubMed:15500465, ECO:0000269\|PubMed:18753286}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027767830.1	0.0	protein NRT1/ PTR FAMILY 8.1-like
Swissprot	Q9M390	0.0	PTR1_ARATH; Protein NRT1/ PTR FAMILY 8.1
TrEMBL	A0A3Q7HVA2	0.0	A0A3Q7HVA2_SOLLC; Uncharacterized protein
STRING	Solyc09g005380.1.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-44	G2-like family protein

Publications ? help Back to Top
Dietrich D, et al. AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis. Plant J., 2004. 40(4): p. 488-99 [PMID:15500465] Endler A, et al. Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach. Plant Physiol., 2006. 141(1): p. 196-207 [PMID:16581873] Tsay YF,Chiu CC,Tsai CB,Ho CH,Hsu PK Nitrate transporters and peptide transporters. FEBS Lett., 2007. 581(12): p. 2290-300 [PMID:17481610] Niittylä T,Fuglsang AT,Palmgren MG,Frommer WB,Schulze WX Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis. Mol. Cell Proteomics, 2007. 6(10): p. 1711-26 [PMID:17586839] Marmagne A, et al. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Mol. Cell Proteomics, 2007. 6(11): p. 1980-96 [PMID:17644812] Komarova NY, et al. AtPTR1 and AtPTR5 transport dipeptides in planta. Plant Physiol., 2008. 148(2): p. 856-69 [PMID:18753286] Lin SH, et al. Mutation of the Arabidopsis NRT1.5 nitrate transporter causes defective root-to-shoot nitrate transport. Plant Cell, 2008. 20(9): p. 2514-28 [PMID:18780802] Li JY, et al. The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance. Plant Cell, 2010. 22(5): p. 1633-46 [PMID:20501909] Hammes UZ,Meier S,Dietrich D,Ward JM,Rentsch D Functional properties of the Arabidopsis peptide transporters AtPTR1 and AtPTR5. J. Biol. Chem., 2010. 285(51): p. 39710-7 [PMID:20937801] Weichert A, et al. AtPTR4 and AtPTR6 are differentially expressed, tonoplast-localized members of the peptide transporter/nitrate transporter 1 (PTR/NRT1) family. Planta, 2012. 235(2): p. 311-23 [PMID:21904872] Komarova NY,Meier S,Meier A,Grotemeyer MS,Rentsch D Determinants for Arabidopsis peptide transporter targeting to the tonoplast or plasma membrane. Traffic, 2012. 13(8): p. 1090-105 [PMID:22537078] Léran S, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends Plant Sci., 2014. 19(1): p. 5-9 [PMID:24055139] Léran S, et al. AtNPF5.5, a nitrate transporter affecting nitrogen accumulation in Arabidopsis embryo. Sci Rep, 2015. 5: p. 7962 [PMID:25608465] Qiu D,Hu R,Li Y,Zhang M Aromatic dipeptide Trp-Ala can be transported by Arabidopsis peptide transporters AtPTR1 and AtPTR5. Channels (Austin), 2017. 11(5): p. 383-387 [PMID:28418760]