PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g031420.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 385aa    MW: 42692.7 Da    PI: 8.4819
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g031420.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.27.1e-24119162144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e
  Sopen08g031420.1 119 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKPVE 162
                       79***************************************987 PP
2QLQ36.81.2e-1369103236
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                       +FTa+Qlq++ +Q  + Ky++a++PvPp+Ll++++
  Sopen08g031420.1  69 PFTASQLQEFQRQFIICKYIMASMPVPPHLLLPLP 103
                       8*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-668104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.00469104IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.9E-1169102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.911119163IPR014977WRC domain
PfamPF088792.8E-19120162IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEKGENTELL DLKMKTSETS YPNKRTMFMA PSSHPYFLKE TADDGGSGGS GPENYVSSGA  60
SITCARKIPF TASQLQEFQR QFIICKYIMA SMPVPPHLLL PLPSPPQSNM DLKFSSGSDP  120
EPWRCKRTDG KKWRCSRDVA PDQKYCERHA HKSKPRSRKP VEIHTNPTPK SNNRHSFQFP  180
TVQPSNDQTR CIEWLGRGDT IGTIPVDDNC NRQLMQSIGF NTRNSPAFQV QHEPKLYPMN  240
FDQYMCNSSS DQALASQLKN EHCNNSIIAS LQGRGTTSNA WPKDGISNNG SSTSLTLSMS  300
GWNRGMDDDN KHAQAGIRML DSERSGIEVL RSQWLNPVSW MSSTAPGGPL GEALCLGNAS  360
SLRSPHGYSN SSATSSCSFD SLRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083658.10.0growth-regulating factor 8-like
TrEMBLA0A3Q7IRD80.0A0A3Q7IRD8_SOLLC; Uncharacterized protein
STRINGSolyc08g083230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.14e-25growth-regulating factor 8