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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g029720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 616aa MW: 69458.9 Da PI: 6.5954 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.8e-09 | 390 | 427 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Sopen08g029720.1 390 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 427 554459******************************88 PP | |||||||
2 | BELL | 115.1 | 3.5e-37 | 251 | 319 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+k+kLl++leeVd+rYk+y++q++ v+ssFeavag g+a++Y +lA++a+SrhFrcL+d i+ qi Sopen08g029720.1 251 ELQKRKTKLLQMLEEVDRRYKHYCDQMKGVVSSFEAVAGNGAATVYSALASRAMSRHFRCLRDGIVAQI 319 89*****************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-48 | 192 | 317 | IPR006563 | POX domain |
Pfam | PF07526 | 1.9E-43 | 198 | 315 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.082 | 368 | 431 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.25E-11 | 371 | 432 | No hit | No description |
SMART | SM00389 | 5.8E-9 | 371 | 435 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 372 | 437 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 374 | 437 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.1E-18 | 388 | 427 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MVTSTGYWFS SDTNNQNPTP HNNIVNHQLQ NFETNPDMYN LSSSTTSSMD QMMLGFPPNN 60 NNPHHVLWKG NFLNKINGVD DDDDDDHGPS SSKNISEQFY QHETMLATTT SHQDSWHHDN 120 NRTLLVDDPS MRCVFPCEGN ERPSQGLSLS LCSSNPSSIG LQSFELRHQD LQQGLIHDGF 180 LGKSTSIQQG YFHHHHQVRD SKYLGPAQEL LSEFCSLGIK KNNDHSSSKL LLKQHDSTSK 240 KQLLQSLDLL ELQKRKTKLL QMLEEVDRRY KHYCDQMKGV VSSFEAVAGN GAATVYSALA 300 SRAMSRHFRC LRDGIVAQIK ATKMAMGEKD STTTLIPGST RGETPRLRLL DQTLRQQKAF 360 QQMNMMETHP WRPQRGLPER SVSVLRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW 420 FINARVRLWK PMVEEMYLEE TKEEEEENVG SQDGSKALID EMTINNHQSS HTDQKPNLVR 480 IESECISSII NHHPHDKNDQ NYGVIRGGDQ SFGAIELDFS TNIAYATNGS DHHHGGGGGS 540 GGVSLTLGLQ QHGGSSMGLT TFSSQPSHHN HNHQSSIFYP RDDHDQVQYS SLLDSENQNL 600 PYRNLMGAQL LHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261242 | 0.0 | GQ261242.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI035 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085556.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-140 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | G8Z264 | 0.0 | G8Z264_SOLLC; Hop-interacting protein THI035 | ||||
STRING | Solyc08g081400.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5300 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-100 | TALE family protein |
Publications ? help Back to Top | |||
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