PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g029440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 626aa    MW: 70226.2 Da    PI: 5.8522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g029440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13439482755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + ErrRR++iN++f  L ++lP++      K++K++ L +++eY+k+L+
  Sopen08g029440.1 439 ISERRRREKINERFMHLASMLPTS-----SKVDKISLLDETIEYMKELE 482
                       68*********************8.....7****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5215202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.139432481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.03E-13435486No hitNo description
SuperFamilySSF474593.4E-16435496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-16437494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-16438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10439482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MAMGHQDQDG VPGNLRKQLA LAVRGIQWSY AIFWSTPVTQ PGVLKWIDGY YNGDIKTRKT  60
VQAGEVNEDQ LGLHRTEQLK ELYSSLLTSE SEEDLQPQAK RPSASLSPED LTDTEWYFLV  120
CMSFVFNVGQ GLPGKTLATN ETVWLCNAHQ AESRVFSRSL LAKSASIQTV VCFPYLGGVI  180
ELGVTELVTE DPNLIQQIKN SFLEVDYSVI LKRPNYVSKD AKNDTNIGSR KPDHNALEND  240
AYPVEINSPH DSSNGFVANQ EAEDSLMVVD GIGETSQAQS WRFMDDNISN GANNSLNSSD  300
CISQNNANCE KLSPLSSGEK ETKPCPLDRQ ENDQKKPHLL DHQRDDAQYQ AVLSTLLKSS  360
DQLTLGPQFR NMNKKSSFAS WKTDIQMPRF GTAQKLLKKV LLEVPRMHAG VLHKFSRENG  420
KKNSLWRPEV DDIDRNRVIS ERRRREKINE RFMHLASMLP TSSKVDKISL LDETIEYMKE  480
LERRVQELEA RSARRSNDTA EQTSDNCGTS KFNDIRGSLP NKRKACDMDE IEPVSCNGLL  540
KCSSADSIVI NMIDKEVSIK MSCLWSESLL LKIMEALTDL HMDCHTVQSS NLDGILSIAI  600
ESKSTGSKTL AVGTIREALQ RVVWKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-181620212192Transcription factor MYC3
4rqw_B5e-181620212192Transcription factor MYC3
4rs9_A5e-181620212192Transcription factor MYC3
4yz6_A5e-181620212192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440445ERRRRE
2441446RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG7638620.0HG763862.1 Solanum tuberosum mRNA for JAF13 transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085827.10.0transcription factor EGL1
TrEMBLU6NE390.0U6NE39_SOLTU; JAF13 transcription factor
STRINGSolyc08g081140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-171bHLH family protein