PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g027070.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 279aa    MW: 31878.1 Da    PI: 7.9742
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g027070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018157179123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C k+ +++  L +H   H
  Sopen08g027070.1 157 HQCGICYKVLKTSQALGSHKTIH 179
                       79*****************9887 PP
2zf-C2H2110.0013215237123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp Cgk F +   L  H r+H
  Sopen08g027070.1 215 HECPFCGKFFQSGQALGGHKRSH 237
                       79**********99999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0019730IPR007087Zinc finger, C2H2
SMARTSM0035558729IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.96E-9155179No hitNo description
PfamPF139121.0E-4157179IPR007087Zinc finger, C2H2
SMARTSM003554.5157179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-5206237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.96E-9210237No hitNo description
PfamPF139122.1E-10215238IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159215237IPR007087Zinc finger, C2H2
SMARTSM003550.039215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MIVMEKHKCK LCSKKFLNGK ALGGRMRSHL IPLPLPPKTP PLNPDSGGRS ESTLSLCSSE  60
NHEDKMVEEK DFSYELRENP KKSFRMIDPE FLDRESETES EKNTENRRRS KRNHERINEV  120
KENIADFRSL NLYSDDADIA MCLMMLSRDS KSNPKQHQCG ICYKVLKTSQ ALGSHKTIHK  180
NRNNYDDDDD EEEQPRKISS KKKLKLVSNV DEKLHECPFC GKFFQSGQAL GGHKRSHLIV  240
VVSSSTLSGS CSSTTLPNRF IDLNMPAPIE DNEFQQEFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084641.10.0zinc finger protein ZAT1-like
TrEMBLA0A3Q7HS971e-152A0A3Q7HS97_SOLLC; Uncharacterized protein
STRINGSolyc08g078590.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-19C2H2-like zinc finger protein