PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g025810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 560aa    MW: 62587.3 Da    PI: 6.5112
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g025810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.6e-28317370256
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        +++WtpeLH++Fv+aveqL G+++A+P++il+lmkv+gLt+++v+SHLQkYR++
  Sopen08g025810.1 317 IKVDWTPELHKKFVQAVEQL-GIDQAIPSRILDLMKVEGLTRHNVASHLQKYRMH 370
                       5899****************.********************************96 PP
2Response_reg33.81.8e-12201261109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+ d++ + +  +++ lek +y +v ++ + +eal+ +  k   +++ ++ ++  ++dG+  l+ +++++ +lp i+ +   + +++ +++ 
  Sopen08g025810.1  20 VLLLDEDSNSAAEMKSRLEKMDY-IVYSFCNESEALTAISSKSegFHVAIVEVSAGNSDGV--LRFLESAK-DLPTIMTSNIHSLSTMMKCIA 108
                       799999999**************.***************777777***************5..77777766.9*******9999********* PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                       +Ga +fl Kp + ++l +
  Sopen08g025810.1 109 LGAVEFLQKPLSDDKLKN 126
                       **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.4E-1716155No hitNo description
SuperFamilySSF521724.27E-1616140IPR011006CheY-like superfamily
SMARTSM004480.003218128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.1119132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.49E-1021131No hitNo description
PROSITE profilePS5129415.85313372IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-27314373IPR009057Homeodomain-like
SuperFamilySSF466892.87E-18315373IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-25316370IPR006447Myb domain, plants
PfamPF002497.2E-8319368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MICIENELLA WKDFPKGLKV LLLDEDSNSA AEMKSRLEKM DYIVYSFCNE SEALTAISSK  60
SEGFHVAIVE VSAGNSDGVL RFLESAKDLP TIMTSNIHSL STMMKCIALG AVEFLQKPLS  120
DDKLKNIWQH VVHKAFNTRK DVSKSLEPVK ESLLSMLQLQ LEMGETDDKS SNGTEPLTAV  180
AESNTEHSSG CDKYPAPSTP QLKQGVRSVD DGDCHDHTIF STDQDSGEHD ADTKSVETTY  240
NNSLAENNVQ TSPTVQQGEI ILKEDNVSSP DLKRETDIAT SSRSNDCPDN SITHSAEPSK  300
ASGPHSSNGT KSNRKKIKVD WTPELHKKFV QAVEQLGIDQ AIPSRILDLM KVEGLTRHNV  360
ASHLQKYRMH RKQILPKEVE RRWPNPQPID SVQRSYYPHK PIMTFPQYHS NHVAPGGQFY  420
PAWVTPASYP NGLQVWGSPY YPAWKPAETW HWTPRPELHA DTWGSPIMSP SFGSYPPYPQ  480
NAGVYRPHGT HNRYSMLEKS FDLHPADEVI DKVVKEAITK PWLPLPLGLK APSTESVLDE  540
LSRQGISTIP SQINGSRCRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-17321372657Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136480.0BT013648.1 Lycopersicon esculentum clone 132455F, mRNA sequence.
GenBankKC1476340.0KC147634.1 Solanum lycopersicum APRR2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085618.10.0two-component response regulator-like APRR2
TrEMBLK4CN830.0K4CN83_SOLLC; APRR2-like protein
STRINGSolyc08g077230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-126ARR-B family protein